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Modeling Protein–Protein Interaction of the KNOTTED-LIKE HOMEOBOX 3 Protein Involved in Symbiotic Nodule Development in Medicago truncatula. / Азарахш, М.; Лебедева, Мария Александровна; Vishvakarma , V. K. .

In: Molecular Biology, Vol. 58, No. 2, 01.04.2024, p. 336–345.

Research output: Contribution to journal › Article › peer-review

Harvard

Азарахш, М, Лебедева, МА & Vishvakarma , VK 2024, 'Modeling Protein–Protein Interaction of the KNOTTED-LIKE HOMEOBOX 3 Protein Involved in Symbiotic Nodule Development in Medicago truncatula', Molecular Biology, vol. 58, no. 2, pp. 336–345. https://doi.org/10.1134/s0026893324020031

APA

Азарахш, М., Лебедева, М. А., & Vishvakarma , V. K. (2024). Modeling Protein–Protein Interaction of the KNOTTED-LIKE HOMEOBOX 3 Protein Involved in Symbiotic Nodule Development in Medicago truncatula. Molecular Biology, 58(2), 336–345. https://doi.org/10.1134/s0026893324020031

Vancouver

Азарахш М, Лебедева МА, Vishvakarma VK. Modeling Protein–Protein Interaction of the KNOTTED-LIKE HOMEOBOX 3 Protein Involved in Symbiotic Nodule Development in Medicago truncatula. Molecular Biology. 2024 Apr 1;58(2):336–345. https://doi.org/10.1134/s0026893324020031

Author

Азарахш, М. ; Лебедева, Мария Александровна ; Vishvakarma , V. K. . / Modeling Protein–Protein Interaction of the KNOTTED-LIKE HOMEOBOX 3 Protein Involved in Symbiotic Nodule Development in Medicago truncatula. In: Molecular Biology. 2024 ; Vol. 58, No. 2. pp. 336–345.

BibTeX

@article{dc137cd280f34317a72718aa632f08df,
title = "Modeling Protein–Protein Interaction of the KNOTTED-LIKE HOMEOBOX 3 Protein Involved in Symbiotic Nodule Development in Medicago truncatula",
abstract = "Abstract: KNOTTED-LIKE HOMEOBOX (KNOX) proteins are homeodomain containing transcription factors, and regulate many aspects of plant development through homo or heterodimerization with another group of TALE transcription factors known as BELL. In Medicago truncatula the MtKNOX3 gene is involved in nodule development. In this work, we hypothesized that MtKNOX3 involvement in the activation of cytokinin signaling during nodule development could be through heterodimerization with BELL proteins. Thereby, the expression of different BELL genes in Medicago was analyzed, and it was shown that the expression of Medtr8g078480 and Medtr8g098815 genes increases during nodule development. Besides, the Medtr8g078480 shows a co-expression pattern with MtKNOX3 at different developmental stages of nodule development. Afterward, the interaction of MtKNOX3 with the MtBELL1-2 (Medtr8g078480) protein was shown using docking, and their stability was analyzed by molecular dynamic simulation and mmpbsa methods. Moreover, the stability of MtKNOX3- Medtr8g078480 heterodimers was compared with the MtKNOX3 homodimer.",
keywords = "MtBELL, MtKNOX, cytokinin, docking, molecular dynamic simulation, nodule development",
author = "М. Азарахш and Лебедева, {Мария Александровна} and Vishvakarma, {V. K.}",
year = "2024",
month = apr,
day = "1",
doi = "10.1134/s0026893324020031",
language = "English",
volume = "58",
pages = "336–345",
journal = "Molecular Biology",
issn = "0026-8933",
publisher = "Pleiades Publishing",
number = "2",

}

RIS

TY - JOUR

T1 - Modeling Protein–Protein Interaction of the KNOTTED-LIKE HOMEOBOX 3 Protein Involved in Symbiotic Nodule Development in Medicago truncatula

AU - Азарахш, М.

AU - Лебедева, Мария Александровна

AU - Vishvakarma , V. K.

PY - 2024/4/1

Y1 - 2024/4/1

N2 - Abstract: KNOTTED-LIKE HOMEOBOX (KNOX) proteins are homeodomain containing transcription factors, and regulate many aspects of plant development through homo or heterodimerization with another group of TALE transcription factors known as BELL. In Medicago truncatula the MtKNOX3 gene is involved in nodule development. In this work, we hypothesized that MtKNOX3 involvement in the activation of cytokinin signaling during nodule development could be through heterodimerization with BELL proteins. Thereby, the expression of different BELL genes in Medicago was analyzed, and it was shown that the expression of Medtr8g078480 and Medtr8g098815 genes increases during nodule development. Besides, the Medtr8g078480 shows a co-expression pattern with MtKNOX3 at different developmental stages of nodule development. Afterward, the interaction of MtKNOX3 with the MtBELL1-2 (Medtr8g078480) protein was shown using docking, and their stability was analyzed by molecular dynamic simulation and mmpbsa methods. Moreover, the stability of MtKNOX3- Medtr8g078480 heterodimers was compared with the MtKNOX3 homodimer.

AB - Abstract: KNOTTED-LIKE HOMEOBOX (KNOX) proteins are homeodomain containing transcription factors, and regulate many aspects of plant development through homo or heterodimerization with another group of TALE transcription factors known as BELL. In Medicago truncatula the MtKNOX3 gene is involved in nodule development. In this work, we hypothesized that MtKNOX3 involvement in the activation of cytokinin signaling during nodule development could be through heterodimerization with BELL proteins. Thereby, the expression of different BELL genes in Medicago was analyzed, and it was shown that the expression of Medtr8g078480 and Medtr8g098815 genes increases during nodule development. Besides, the Medtr8g078480 shows a co-expression pattern with MtKNOX3 at different developmental stages of nodule development. Afterward, the interaction of MtKNOX3 with the MtBELL1-2 (Medtr8g078480) protein was shown using docking, and their stability was analyzed by molecular dynamic simulation and mmpbsa methods. Moreover, the stability of MtKNOX3- Medtr8g078480 heterodimers was compared with the MtKNOX3 homodimer.

KW - MtBELL

KW - MtKNOX

KW - cytokinin

KW - docking

KW - molecular dynamic simulation

KW - nodule development

UR - https://www.mendeley.com/catalogue/2827f93b-6742-3ca5-a9dc-b377a28cc1e9/

U2 - 10.1134/s0026893324020031

DO - 10.1134/s0026893324020031

M3 - Article

VL - 58

SP - 336

EP - 345

JO - Molecular Biology

JF - Molecular Biology

SN - 0026-8933

IS - 2

ER -

ID: 127469639