Microbial features of mature and abandoned soils in refractory clay deposits

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Microbial features of mature and abandoned soils in refractory clay deposits. / Zverev, Aleksei ; Кимеклис, Анастасия Кирилловна; Кичко, Арина Александровна; Gladkov, Grigory ; Андронов, Евгений Евгеньевич ; Abakumov, Evgeny .

In: BMC Microbiology, Vol. 22, No. 1, 237, 12.2022.

Research output: Contribution to journal › Article › peer-review

BibTeX

@article{843ee2a5aca840f2b87db9607f61bfe6,

title = "Microbial features of mature and abandoned soils in refractory clay deposits",

abstract = "Processes of soil restoration in anthropogenically disturbed soils is an urgent topic in modern ecology and nature management. Being mediator between mineral soil composition and plant vegetation, soil microbial community is important factor of soil restoration processes. Analysis of main soil nutrition components followed by 16S amplicon sequencing are sufficient methods for primary analysis of novel locations. Here is the primary analysis in a novel location in Northwest Europe (Russia). Main nutrition parameters (pH, P, Na and NH4+) and 16S rDNA Illumina amplicons were explored in abandoned soils from sandy pit quarry (2 sites) and refractory clay mining dumps (4 sites).Microbial communities of mature soils and dumps are variable and different in terms both nutritional and microbial components. pH, N and TOC are strong predictors for microbial composition. Dumps of refractory clays pQ_2 are non-developed soils, highly acidic and form specific microbial community. Differences between dumps and mature soils in both pre-quaternary and quaternary soils are connected with specific bacterial taxa. Those taxa are connected more with plant composition, not the soil properties themselves. The exact changes in microbial community are unique for different soils and areas.",

keywords = "16S amplicons, Abandoned soils, Anthropogenically disturbed soils, Microbiome analysis, Soil biodiversity, Soil microbiome, Clay, DNA, Ribosomal, Soil/chemistry, Soil Microbiology, RNA, Ribosomal, 16S/genetics",

author = "Aleksei Zverev and Кимеклис, {Анастасия Кирилловна} and Кичко, {Арина Александровна} and Grigory Gladkov and Андронов, {Евгений Евгеньевич} and Evgeny Abakumov",

note = "Publisher Copyright: {\textcopyright} 2022, The Author(s).",

year = "2022",

month = dec,

doi = "10.1186/s12866-022-02634-7",

language = "English",

volume = "22",

journal = "BMC Microbiology",

issn = "1471-2180",

publisher = "BioMed Central Ltd.",

number = "1",

}

RIS

TY - JOUR

T1 - Microbial features of mature and abandoned soils in refractory clay deposits

AU - Zverev, Aleksei

AU - Кимеклис, Анастасия Кирилловна

AU - Кичко, Арина Александровна

AU - Gladkov, Grigory

AU - Андронов, Евгений Евгеньевич

AU - Abakumov, Evgeny

PY - 2022/12

Y1 - 2022/12

N2 - Processes of soil restoration in anthropogenically disturbed soils is an urgent topic in modern ecology and nature management. Being mediator between mineral soil composition and plant vegetation, soil microbial community is important factor of soil restoration processes. Analysis of main soil nutrition components followed by 16S amplicon sequencing are sufficient methods for primary analysis of novel locations. Here is the primary analysis in a novel location in Northwest Europe (Russia). Main nutrition parameters (pH, P, Na and NH4+) and 16S rDNA Illumina amplicons were explored in abandoned soils from sandy pit quarry (2 sites) and refractory clay mining dumps (4 sites).Microbial communities of mature soils and dumps are variable and different in terms both nutritional and microbial components. pH, N and TOC are strong predictors for microbial composition. Dumps of refractory clays pQ_2 are non-developed soils, highly acidic and form specific microbial community. Differences between dumps and mature soils in both pre-quaternary and quaternary soils are connected with specific bacterial taxa. Those taxa are connected more with plant composition, not the soil properties themselves. The exact changes in microbial community are unique for different soils and areas.

AB - Processes of soil restoration in anthropogenically disturbed soils is an urgent topic in modern ecology and nature management. Being mediator between mineral soil composition and plant vegetation, soil microbial community is important factor of soil restoration processes. Analysis of main soil nutrition components followed by 16S amplicon sequencing are sufficient methods for primary analysis of novel locations. Here is the primary analysis in a novel location in Northwest Europe (Russia). Main nutrition parameters (pH, P, Na and NH4+) and 16S rDNA Illumina amplicons were explored in abandoned soils from sandy pit quarry (2 sites) and refractory clay mining dumps (4 sites).Microbial communities of mature soils and dumps are variable and different in terms both nutritional and microbial components. pH, N and TOC are strong predictors for microbial composition. Dumps of refractory clays pQ_2 are non-developed soils, highly acidic and form specific microbial community. Differences between dumps and mature soils in both pre-quaternary and quaternary soils are connected with specific bacterial taxa. Those taxa are connected more with plant composition, not the soil properties themselves. The exact changes in microbial community are unique for different soils and areas.

KW - 16S amplicons

KW - Abandoned soils

KW - Anthropogenically disturbed soils

KW - Microbiome analysis

KW - Soil biodiversity

KW - Soil microbiome

KW - Clay

KW - DNA, Ribosomal

KW - Soil/chemistry

KW - Soil Microbiology

KW - RNA, Ribosomal, 16S/genetics

UR - http://www.scopus.com/inward/record.url?scp=85139442946&partnerID=8YFLogxK

UR - https://www.mendeley.com/catalogue/43668994-124a-3bc0-bdb4-0a65c8d2357a/

U2 - 10.1186/s12866-022-02634-7

DO - 10.1186/s12866-022-02634-7

M3 - Article

C2 - 36195831

VL - 22

JO - BMC Microbiology

JF - BMC Microbiology

SN - 1471-2180

IS - 1

M1 - 237

ER -

ID: 101052161