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Increasing the reference populations for the 55 AISNP panel : the need and benefits. / Pakstis, Andrew J.; Kang, Longli; Liu, Lijun; Zhang, Zhiying; Jin, Tianbo; Grigorenko, Elena L.; Wendt, Frank R.; Budowle, Bruce; Hadi, Sibte; Al Qahtani, Mariam Salam; Morling, Niels; Mogensen, Helle Smidt; Themudo, Goncalo E.; Soundararajan, Usha; Rajeevan, Haseena; Kidd, Judith R.; Kidd, Kenneth K.

In: International Journal of Legal Medicine, Vol. 131, No. 4, 01.07.2017, p. 913-917.

Research output: Contribution to journal › Article › peer-review

Harvard

Pakstis, AJ, Kang, L, Liu, L, Zhang, Z, Jin, T, Grigorenko, EL, Wendt, FR, Budowle, B, Hadi, S, Al Qahtani, MS, Morling, N, Mogensen, HS, Themudo, GE, Soundararajan, U, Rajeevan, H, Kidd, JR & Kidd, KK 2017, 'Increasing the reference populations for the 55 AISNP panel: the need and benefits', International Journal of Legal Medicine, vol. 131, no. 4, pp. 913-917. https://doi.org/10.1007/s00414-016-1524-z

APA

Pakstis, A. J., Kang, L., Liu, L., Zhang, Z., Jin, T., Grigorenko, E. L., Wendt, F. R., Budowle, B., Hadi, S., Al Qahtani, M. S., Morling, N., Mogensen, H. S., Themudo, G. E., Soundararajan, U., Rajeevan, H., Kidd, J. R., & Kidd, K. K. (2017). Increasing the reference populations for the 55 AISNP panel: the need and benefits. International Journal of Legal Medicine, 131(4), 913-917. https://doi.org/10.1007/s00414-016-1524-z

Vancouver

Pakstis AJ, Kang L, Liu L, Zhang Z, Jin T, Grigorenko EL et al. Increasing the reference populations for the 55 AISNP panel: the need and benefits. International Journal of Legal Medicine. 2017 Jul 1;131(4):913-917. https://doi.org/10.1007/s00414-016-1524-z

Author

Pakstis, Andrew J. ; Kang, Longli ; Liu, Lijun ; Zhang, Zhiying ; Jin, Tianbo ; Grigorenko, Elena L. ; Wendt, Frank R. ; Budowle, Bruce ; Hadi, Sibte ; Al Qahtani, Mariam Salam ; Morling, Niels ; Mogensen, Helle Smidt ; Themudo, Goncalo E. ; Soundararajan, Usha ; Rajeevan, Haseena ; Kidd, Judith R. ; Kidd, Kenneth K. / Increasing the reference populations for the 55 AISNP panel : the need and benefits. In: International Journal of Legal Medicine. 2017 ; Vol. 131, No. 4. pp. 913-917.

BibTeX

@article{401de3e9b9cc400990571f0ef3ace204,
title = "Increasing the reference populations for the 55 AISNP panel: the need and benefits",
abstract = "Ancestry inference for an individual can only be as good as the reference populations with allele frequency data on the SNPs being used. If the most relevant ancestral population(s) does not have data available for the SNPs studied, then analyses based on DNA evidence may indicate a quite distantly related population, albeit one among the more closely related of the existing reference populations. We have added reference population allele frequencies for 14 additional population samples (with >1100 individuals studied) to the 125 population samples previously published for the Kidd Lab 55 AISNP panel. Allele frequencies are now publicly available for all 55 SNPs in ALFRED and FROG-kb for a total of 139 population samples. This Kidd Lab panel of 55 ancestry informative SNPs has been incorporated in commercial kits by both ThermoFisher Scientific and Illumina for massively parallel sequencing. Researchers employing those kits will find the enhanced set of reference populations useful.",
keywords = "Alfred, Ancestry, FROG-kb, Reference database, SNP",
author = "Pakstis, {Andrew J.} and Longli Kang and Lijun Liu and Zhiying Zhang and Tianbo Jin and Grigorenko, {Elena L.} and Wendt, {Frank R.} and Bruce Budowle and Sibte Hadi and {Al Qahtani}, {Mariam Salam} and Niels Morling and Mogensen, {Helle Smidt} and Themudo, {Goncalo E.} and Usha Soundararajan and Haseena Rajeevan and Kidd, {Judith R.} and Kidd, {Kenneth K.}",
year = "2017",
month = jul,
day = "1",
doi = "10.1007/s00414-016-1524-z",
language = "English",
volume = "131",
pages = "913--917",
journal = "International Journal of Legal Medicine",
issn = "0937-9827",
publisher = "Springer Nature",
number = "4",

}

RIS

TY - JOUR

T1 - Increasing the reference populations for the 55 AISNP panel

T2 - the need and benefits

AU - Pakstis, Andrew J.

AU - Kang, Longli

AU - Liu, Lijun

AU - Zhang, Zhiying

AU - Jin, Tianbo

AU - Grigorenko, Elena L.

AU - Wendt, Frank R.

AU - Budowle, Bruce

AU - Hadi, Sibte

AU - Al Qahtani, Mariam Salam

AU - Morling, Niels

AU - Mogensen, Helle Smidt

AU - Themudo, Goncalo E.

AU - Soundararajan, Usha

AU - Rajeevan, Haseena

AU - Kidd, Judith R.

AU - Kidd, Kenneth K.

PY - 2017/7/1

Y1 - 2017/7/1

N2 - Ancestry inference for an individual can only be as good as the reference populations with allele frequency data on the SNPs being used. If the most relevant ancestral population(s) does not have data available for the SNPs studied, then analyses based on DNA evidence may indicate a quite distantly related population, albeit one among the more closely related of the existing reference populations. We have added reference population allele frequencies for 14 additional population samples (with >1100 individuals studied) to the 125 population samples previously published for the Kidd Lab 55 AISNP panel. Allele frequencies are now publicly available for all 55 SNPs in ALFRED and FROG-kb for a total of 139 population samples. This Kidd Lab panel of 55 ancestry informative SNPs has been incorporated in commercial kits by both ThermoFisher Scientific and Illumina for massively parallel sequencing. Researchers employing those kits will find the enhanced set of reference populations useful.

AB - Ancestry inference for an individual can only be as good as the reference populations with allele frequency data on the SNPs being used. If the most relevant ancestral population(s) does not have data available for the SNPs studied, then analyses based on DNA evidence may indicate a quite distantly related population, albeit one among the more closely related of the existing reference populations. We have added reference population allele frequencies for 14 additional population samples (with >1100 individuals studied) to the 125 population samples previously published for the Kidd Lab 55 AISNP panel. Allele frequencies are now publicly available for all 55 SNPs in ALFRED and FROG-kb for a total of 139 population samples. This Kidd Lab panel of 55 ancestry informative SNPs has been incorporated in commercial kits by both ThermoFisher Scientific and Illumina for massively parallel sequencing. Researchers employing those kits will find the enhanced set of reference populations useful.

KW - Alfred

KW - Ancestry

KW - FROG-kb

KW - Reference database

KW - SNP

UR - http://www.scopus.com/inward/record.url?scp=85008622521&partnerID=8YFLogxK

U2 - 10.1007/s00414-016-1524-z

DO - 10.1007/s00414-016-1524-z

M3 - Article

C2 - 28070634

AN - SCOPUS:85008622521

VL - 131

SP - 913

EP - 917

JO - International Journal of Legal Medicine

JF - International Journal of Legal Medicine

SN - 0937-9827

IS - 4

ER -

ID: 62762512