Standard

High-quality draft genome sequence of Flavobacterium suncheonense GH29-5(T) (DSM 17707(T)) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5(T). / Tashkandy, Nisreen; Sabban, Sari; Fakieh, Mohammad; Meier-Kolthoff, Jan P.; Huang, Sixing; Tindall, Brian J.; Rohde, Manfred; Baeshen, Mohammed N.; Baeshen, Nabih A.; Lapidus, Alla; Copeland, Alex; Pillay, Manoj; Reddy, T. B. K.; Huntemann, Marcel; Pati, Amrita; Ivanova, Natalia; Markowitz, Victor; Woyke, Tanja; Goeker, Markus; Klenk, Hans-Peter; Kyrpides, Nikos C.; Hahnke, Richard L.

In: Standards in Genomic Sciences, Vol. 11, 2016.

Research output: Contribution to journal › Article › peer-review

Harvard

Tashkandy, N, Sabban, S, Fakieh, M, Meier-Kolthoff, JP, Huang, S, Tindall, BJ, Rohde, M, Baeshen, MN, Baeshen, NA, Lapidus, A, Copeland, A, Pillay, M, Reddy, TBK, Huntemann, M, Pati, A, Ivanova, N, Markowitz, V, Woyke, T, Goeker, M, Klenk, H-P, Kyrpides, NC & Hahnke, RL 2016, 'High-quality draft genome sequence of Flavobacterium suncheonense GH29-5(T) (DSM 17707(T)) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5(T)', Standards in Genomic Sciences, vol. 11. https://doi.org/10.1186/s40793-016-0159-5

APA

Tashkandy, N., Sabban, S., Fakieh, M., Meier-Kolthoff, J. P., Huang, S., Tindall, B. J., Rohde, M., Baeshen, M. N., Baeshen, N. A., Lapidus, A., Copeland, A., Pillay, M., Reddy, T. B. K., Huntemann, M., Pati, A., Ivanova, N., Markowitz, V., Woyke, T., Goeker, M., ... Hahnke, R. L. (2016). High-quality draft genome sequence of Flavobacterium suncheonense GH29-5(T) (DSM 17707(T)) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5(T). Standards in Genomic Sciences, 11. https://doi.org/10.1186/s40793-016-0159-5

Vancouver

Tashkandy N, Sabban S, Fakieh M, Meier-Kolthoff JP, Huang S, Tindall BJ et al. High-quality draft genome sequence of Flavobacterium suncheonense GH29-5(T) (DSM 17707(T)) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5(T). Standards in Genomic Sciences. 2016;11. https://doi.org/10.1186/s40793-016-0159-5

Author

Tashkandy, Nisreen ; Sabban, Sari ; Fakieh, Mohammad ; Meier-Kolthoff, Jan P. ; Huang, Sixing ; Tindall, Brian J. ; Rohde, Manfred ; Baeshen, Mohammed N. ; Baeshen, Nabih A. ; Lapidus, Alla ; Copeland, Alex ; Pillay, Manoj ; Reddy, T. B. K. ; Huntemann, Marcel ; Pati, Amrita ; Ivanova, Natalia ; Markowitz, Victor ; Woyke, Tanja ; Goeker, Markus ; Klenk, Hans-Peter ; Kyrpides, Nikos C. ; Hahnke, Richard L. / High-quality draft genome sequence of Flavobacterium suncheonense GH29-5(T) (DSM 17707(T)) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5(T). In: Standards in Genomic Sciences. 2016 ; Vol. 11.

BibTeX

@article{2f371369779e4496b0e5ba095a198a1e,
title = "High-quality draft genome sequence of Flavobacterium suncheonense GH29-5(T) (DSM 17707(T)) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5(T)",
abstract = "Flavobacterium suncheonense is a member of the family Flavobacteriaceae in the phylum Bacteroidetes. Strain GH29-5(T) (DSM 17707(T)) was isolated from greenhouse soil in Suncheon, South Korea. F. suncheonense GH29-5(T) is part of the Genomic Encyclopedia of Bacteria and Archaea project. The 2,880,663 bp long draft genome consists of 54 scaffolds with 2739 protein-coding genes and 82 RNA genes. The genome of strain GH29-5(T) has 117 genes encoding peptidases but a small number of genes encoding carbohydrate active enzymes (51 CAZymes). Metallo and serine peptidases were found most frequently. Among CAZymes, eight glycoside hydrolase families, nine glycosyl transferase families, two carbohydrate binding module families and four carbohydrate esterase families were identified. Suprisingly, polysaccharides utilization loci (PULs) were not found in strain GH29-5(T). Based on the coherent physiological and genomic characteristics we suggest that F. suncheonense GH29-5(T) feeds rather on proteins than saccharides and",
author = "Nisreen Tashkandy and Sari Sabban and Mohammad Fakieh and Meier-Kolthoff, {Jan P.} and Sixing Huang and Tindall, {Brian J.} and Manfred Rohde and Baeshen, {Mohammed N.} and Baeshen, {Nabih A.} and Alla Lapidus and Alex Copeland and Manoj Pillay and Reddy, {T. B. K.} and Marcel Huntemann and Amrita Pati and Natalia Ivanova and Victor Markowitz and Tanja Woyke and Markus Goeker and Hans-Peter Klenk and Kyrpides, {Nikos C.} and Hahnke, {Richard L.}",
year = "2016",
doi = "10.1186/s40793-016-0159-5",
language = "English",
volume = "11",
journal = "Standards in Genomic Sciences",
issn = "1944-3277",
publisher = "Michigan State University",

}

RIS

TY - JOUR

T1 - High-quality draft genome sequence of Flavobacterium suncheonense GH29-5(T) (DSM 17707(T)) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5(T)

AU - Tashkandy, Nisreen

AU - Sabban, Sari

AU - Fakieh, Mohammad

AU - Meier-Kolthoff, Jan P.

AU - Huang, Sixing

AU - Tindall, Brian J.

AU - Rohde, Manfred

AU - Baeshen, Mohammed N.

AU - Baeshen, Nabih A.

AU - Lapidus, Alla

AU - Copeland, Alex

AU - Pillay, Manoj

AU - Reddy, T. B. K.

AU - Huntemann, Marcel

AU - Pati, Amrita

AU - Ivanova, Natalia

AU - Markowitz, Victor

AU - Woyke, Tanja

AU - Goeker, Markus

AU - Klenk, Hans-Peter

AU - Kyrpides, Nikos C.

AU - Hahnke, Richard L.

PY - 2016

Y1 - 2016

N2 - Flavobacterium suncheonense is a member of the family Flavobacteriaceae in the phylum Bacteroidetes. Strain GH29-5(T) (DSM 17707(T)) was isolated from greenhouse soil in Suncheon, South Korea. F. suncheonense GH29-5(T) is part of the Genomic Encyclopedia of Bacteria and Archaea project. The 2,880,663 bp long draft genome consists of 54 scaffolds with 2739 protein-coding genes and 82 RNA genes. The genome of strain GH29-5(T) has 117 genes encoding peptidases but a small number of genes encoding carbohydrate active enzymes (51 CAZymes). Metallo and serine peptidases were found most frequently. Among CAZymes, eight glycoside hydrolase families, nine glycosyl transferase families, two carbohydrate binding module families and four carbohydrate esterase families were identified. Suprisingly, polysaccharides utilization loci (PULs) were not found in strain GH29-5(T). Based on the coherent physiological and genomic characteristics we suggest that F. suncheonense GH29-5(T) feeds rather on proteins than saccharides and

AB - Flavobacterium suncheonense is a member of the family Flavobacteriaceae in the phylum Bacteroidetes. Strain GH29-5(T) (DSM 17707(T)) was isolated from greenhouse soil in Suncheon, South Korea. F. suncheonense GH29-5(T) is part of the Genomic Encyclopedia of Bacteria and Archaea project. The 2,880,663 bp long draft genome consists of 54 scaffolds with 2739 protein-coding genes and 82 RNA genes. The genome of strain GH29-5(T) has 117 genes encoding peptidases but a small number of genes encoding carbohydrate active enzymes (51 CAZymes). Metallo and serine peptidases were found most frequently. Among CAZymes, eight glycoside hydrolase families, nine glycosyl transferase families, two carbohydrate binding module families and four carbohydrate esterase families were identified. Suprisingly, polysaccharides utilization loci (PULs) were not found in strain GH29-5(T). Based on the coherent physiological and genomic characteristics we suggest that F. suncheonense GH29-5(T) feeds rather on proteins than saccharides and

U2 - 10.1186/s40793-016-0159-5

DO - 10.1186/s40793-016-0159-5

M3 - Article

VL - 11

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

SN - 1944-3277

ER -

ID: 7950511