The feasibility of femtosecond laser-induced periodic nanostructures on thin Ti and Cu foils (thickness down to 1 μm) is demonstrated. At pulse durations of 120 fs and a wavelength of 400 nm, periods of 61 nm to 320 nm were obtained. Particle-in-cell simulations of laser ion acceleration processes with such nanostructured targets indicate their potential for high energy particle physics applications. In particular, a measurable enhancement of the proton cut-off energy and a significant enhancement of the number of accelerated particles compared to non- or weakly structured targets of same thickness and material are expected.