Standard

Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15T). / Klenk, Hans Peter; Lu, Megan; Lucas, Susan; Lapidus, Alla; Copeland, Alex; Pitluck, Sam; Goodwin, Lynne A.; Han, Cliff; Tapia, Roxanne; Brambilla, Evelyne Marie; Pötter, Gabriele; Land, Miriam; Ivanova, Natalia; Rohde, Manfred; Göker, Markus; Detter, John C.; Li, Wen Jun; Kyrpides, Nikos C.; Woyke, Tanja.

In: Standards in Genomic Sciences, Vol. 6, No. 2, 12.07.2012, p. 265-275.

Research output: Contribution to journal › Article › peer-review

Harvard

Klenk, HP, Lu, M, Lucas, S, Lapidus, A, Copeland, A, Pitluck, S, Goodwin, LA, Han, C, Tapia, R, Brambilla, EM, Pötter, G, Land, M, Ivanova, N, Rohde, M, Göker, M, Detter, JC, Li, WJ, Kyrpides, NC & Woyke, T 2012, 'Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15T)', Standards in Genomic Sciences, vol. 6, no. 2, pp. 265-275. https://doi.org/10.4056/sigs.2655905

APA

Klenk, H. P., Lu, M., Lucas, S., Lapidus, A., Copeland, A., Pitluck, S., Goodwin, L. A., Han, C., Tapia, R., Brambilla, E. M., Pötter, G., Land, M., Ivanova, N., Rohde, M., Göker, M., Detter, J. C., Li, W. J., Kyrpides, N. C., & Woyke, T. (2012). Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15T). Standards in Genomic Sciences, 6(2), 265-275. https://doi.org/10.4056/sigs.2655905

Vancouver

Klenk HP, Lu M, Lucas S, Lapidus A, Copeland A, Pitluck S et al. Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15T). Standards in Genomic Sciences. 2012 Jul 12;6(2):265-275. https://doi.org/10.4056/sigs.2655905

Author

Klenk, Hans Peter ; Lu, Megan ; Lucas, Susan ; Lapidus, Alla ; Copeland, Alex ; Pitluck, Sam ; Goodwin, Lynne A. ; Han, Cliff ; Tapia, Roxanne ; Brambilla, Evelyne Marie ; Pötter, Gabriele ; Land, Miriam ; Ivanova, Natalia ; Rohde, Manfred ; Göker, Markus ; Detter, John C. ; Li, Wen Jun ; Kyrpides, Nikos C. ; Woyke, Tanja. / Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15T). In: Standards in Genomic Sciences. 2012 ; Vol. 6, No. 2. pp. 265-275.

BibTeX

@article{fd2a1fce98b244c389415bb213d944f9,
title = "Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15T)",
abstract = "Saccharomonospora marina Liu et al. 2010 is a member of the genus Saccharomonospora, in the family Pseudonocardiaceae that is poorly characterized at the genome level thus far. Members of the genus Saccharomonospora are of interest because they originate from diverse habitats, such as leaf litter, manure, compost, surface of peat, moist, over-heated grain, and ocean sediment, where they might play a role in the primary degradation of plant material by attacking hemicellulose. Organisms belonging to the genus are usually Gram-positive stain-ing, non-acid fast, and classify among the actinomycetes. Here we describe the features of this organism, together with the complete genome sequence (permanent draft status), and an-notation. The 5,965,593 bp long chromosome with its 5,727 protein-coding and 57 RNA genes was sequenced as part of the DOE funded Community Sequencing Program (CSP) 2010 at the Joint Genome Institute (JGI).",
keywords = "Aerobic, Chemoheterotrophic, CSP 2010, Gram-positive, Marine bacterium, Non-motile, Pseudonocardiaceae, Spore-forming, Vegetative and aerial mycelia",
author = "Klenk, {Hans Peter} and Megan Lu and Susan Lucas and Alla Lapidus and Alex Copeland and Sam Pitluck and Goodwin, {Lynne A.} and Cliff Han and Roxanne Tapia and Brambilla, {Evelyne Marie} and Gabriele P{\"o}tter and Miriam Land and Natalia Ivanova and Manfred Rohde and Markus G{\"o}ker and Detter, {John C.} and Li, {Wen Jun} and Kyrpides, {Nikos C.} and Tanja Woyke",
year = "2012",
month = jul,
day = "12",
doi = "10.4056/sigs.2655905",
language = "English",
volume = "6",
pages = "265--275",
journal = "Standards in Genomic Sciences",
issn = "1944-3277",
publisher = "Michigan State University",
number = "2",

}

RIS

TY - JOUR

T1 - Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15T)

AU - Klenk, Hans Peter

AU - Lu, Megan

AU - Lucas, Susan

AU - Lapidus, Alla

AU - Copeland, Alex

AU - Pitluck, Sam

AU - Goodwin, Lynne A.

AU - Han, Cliff

AU - Tapia, Roxanne

AU - Brambilla, Evelyne Marie

AU - Pötter, Gabriele

AU - Land, Miriam

AU - Ivanova, Natalia

AU - Rohde, Manfred

AU - Göker, Markus

AU - Detter, John C.

AU - Li, Wen Jun

AU - Kyrpides, Nikos C.

AU - Woyke, Tanja

PY - 2012/7/12

Y1 - 2012/7/12

N2 - Saccharomonospora marina Liu et al. 2010 is a member of the genus Saccharomonospora, in the family Pseudonocardiaceae that is poorly characterized at the genome level thus far. Members of the genus Saccharomonospora are of interest because they originate from diverse habitats, such as leaf litter, manure, compost, surface of peat, moist, over-heated grain, and ocean sediment, where they might play a role in the primary degradation of plant material by attacking hemicellulose. Organisms belonging to the genus are usually Gram-positive stain-ing, non-acid fast, and classify among the actinomycetes. Here we describe the features of this organism, together with the complete genome sequence (permanent draft status), and an-notation. The 5,965,593 bp long chromosome with its 5,727 protein-coding and 57 RNA genes was sequenced as part of the DOE funded Community Sequencing Program (CSP) 2010 at the Joint Genome Institute (JGI).

AB - Saccharomonospora marina Liu et al. 2010 is a member of the genus Saccharomonospora, in the family Pseudonocardiaceae that is poorly characterized at the genome level thus far. Members of the genus Saccharomonospora are of interest because they originate from diverse habitats, such as leaf litter, manure, compost, surface of peat, moist, over-heated grain, and ocean sediment, where they might play a role in the primary degradation of plant material by attacking hemicellulose. Organisms belonging to the genus are usually Gram-positive stain-ing, non-acid fast, and classify among the actinomycetes. Here we describe the features of this organism, together with the complete genome sequence (permanent draft status), and an-notation. The 5,965,593 bp long chromosome with its 5,727 protein-coding and 57 RNA genes was sequenced as part of the DOE funded Community Sequencing Program (CSP) 2010 at the Joint Genome Institute (JGI).

KW - Aerobic

KW - Chemoheterotrophic

KW - CSP 2010

KW - Gram-positive

KW - Marine bacterium

KW - Non-motile

KW - Pseudonocardiaceae

KW - Spore-forming

KW - Vegetative and aerial mycelia

UR - http://www.scopus.com/inward/record.url?scp=84863572209&partnerID=8YFLogxK

U2 - 10.4056/sigs.2655905

DO - 10.4056/sigs.2655905

M3 - Article

AN - SCOPUS:84863572209

VL - 6

SP - 265

EP - 275

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

SN - 1944-3277

IS - 2

ER -

ID: 36055373