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Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography. / Normand, Philippe; Lapierre, Pascal; Tisa, Louis S.; Gogarten, Johann Peter; Alloisio, Nicole; Bagnarol, Emilie; Bassi, Carla A.; Berry, Alison M.; Bickhart, Derek M.; Choisne, Nathalie; Couloux, Arnaud; Cournoyer, Benoit; Cruveiller, Stephane; Daubin, Vincent; Demange, Nadia; Francino, Maria Pilar; Goltsman, Eugene; Huang, Ying; Kopp, Olga R.; Labarre, Laurent; Lapidus, Alla; Lavire, Celine; Marechal, Joelle; Martinez, Michele; Mastronunzio, Juliana E.; Mullin, Beth C.; Niemann, James; Pujic, Pierre; Rawnsley, Tania; Rouy, Zoe; Schenowitz, Chantal; Sellstedt, Anita; Tavares, Fernando; Tomkins, Jeffrey P.; Vallenet, David; Valverde, Claudio; Wall, Luis G.; Wang, Ying; Medigue, Claudine; Benson, David R.

In: Genome Research, Vol. 17, No. 1, 01.2007, p. 7-15.

Research output: Contribution to journal › Article › peer-review

Harvard

Normand, P, Lapierre, P, Tisa, LS, Gogarten, JP, Alloisio, N, Bagnarol, E, Bassi, CA, Berry, AM, Bickhart, DM, Choisne, N, Couloux, A, Cournoyer, B, Cruveiller, S, Daubin, V, Demange, N, Francino, MP, Goltsman, E, Huang, Y, Kopp, OR, Labarre, L, Lapidus, A, Lavire, C, Marechal, J, Martinez, M, Mastronunzio, JE, Mullin, BC, Niemann, J, Pujic, P, Rawnsley, T, Rouy, Z, Schenowitz, C, Sellstedt, A, Tavares, F, Tomkins, JP, Vallenet, D, Valverde, C, Wall, LG, Wang, Y, Medigue, C & Benson, DR 2007, 'Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography', Genome Research, vol. 17, no. 1, pp. 7-15. https://doi.org/10.1101/gr.5798407

APA

Normand, P., Lapierre, P., Tisa, L. S., Gogarten, J. P., Alloisio, N., Bagnarol, E., Bassi, C. A., Berry, A. M., Bickhart, D. M., Choisne, N., Couloux, A., Cournoyer, B., Cruveiller, S., Daubin, V., Demange, N., Francino, M. P., Goltsman, E., Huang, Y., Kopp, O. R., ... Benson, D. R. (2007). Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography. Genome Research, 17(1), 7-15. https://doi.org/10.1101/gr.5798407

Vancouver

Normand P, Lapierre P, Tisa LS, Gogarten JP, Alloisio N, Bagnarol E et al. Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography. Genome Research. 2007 Jan;17(1):7-15. https://doi.org/10.1101/gr.5798407

Author

Normand, Philippe ; Lapierre, Pascal ; Tisa, Louis S. ; Gogarten, Johann Peter ; Alloisio, Nicole ; Bagnarol, Emilie ; Bassi, Carla A. ; Berry, Alison M. ; Bickhart, Derek M. ; Choisne, Nathalie ; Couloux, Arnaud ; Cournoyer, Benoit ; Cruveiller, Stephane ; Daubin, Vincent ; Demange, Nadia ; Francino, Maria Pilar ; Goltsman, Eugene ; Huang, Ying ; Kopp, Olga R. ; Labarre, Laurent ; Lapidus, Alla ; Lavire, Celine ; Marechal, Joelle ; Martinez, Michele ; Mastronunzio, Juliana E. ; Mullin, Beth C. ; Niemann, James ; Pujic, Pierre ; Rawnsley, Tania ; Rouy, Zoe ; Schenowitz, Chantal ; Sellstedt, Anita ; Tavares, Fernando ; Tomkins, Jeffrey P. ; Vallenet, David ; Valverde, Claudio ; Wall, Luis G. ; Wang, Ying ; Medigue, Claudine ; Benson, David R. / Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography. In: Genome Research. 2007 ; Vol. 17, No. 1. pp. 7-15.

BibTeX

@article{63df552681ba4f708991926107fcc668,
title = "Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography",
abstract = "Soil bacteria that also form mutualistic symbioses in plants encounter two major levels of selection. One occurs during adaptation to and survival in soil, and the other occurs in concert with host plant speciation and adaptation. Actinobacteria from the genus Frankia are facultative symbionts that form N 2-fixing root nodules on diverse and globally distributed angiosperms in the {"}actinorhizal{"} symbioses. Three closely related clades of Frankia sp. strains are recognized; members of each clade infect a subset of plants from among eight angiosperm families. We sequenced the genomes from three strains; their sizes varied from 5.43 Mbp for a narrow host range strain (Frankia sp. strain HFPCcI3) to 7.50 Mbp for a medium host range strain (Frankia alni strain ACN14a) to 9.04 Mbp for a broad host range strain (Frankia sp. strain EAN1pec.) This size divergence is the largest yet reported for such closely related soil bacteria (97.8%-98.9% identity of 16S rRNA genes). The extent of gene deletion, duplication, and acquisition is in concert with the biogeographic history of the symbioses and host plant speciation. Host plant isolation favored genome contraction, whereas host plant diversification favored genome expansion. The results support the idea that major genome expansions as well as reductions can occur in facultative symbiotic soil bacteria as they respond to new environments in the context of their symbioses.",
author = "Philippe Normand and Pascal Lapierre and Tisa, {Louis S.} and Gogarten, {Johann Peter} and Nicole Alloisio and Emilie Bagnarol and Bassi, {Carla A.} and Berry, {Alison M.} and Bickhart, {Derek M.} and Nathalie Choisne and Arnaud Couloux and Benoit Cournoyer and Stephane Cruveiller and Vincent Daubin and Nadia Demange and Francino, {Maria Pilar} and Eugene Goltsman and Ying Huang and Kopp, {Olga R.} and Laurent Labarre and Alla Lapidus and Celine Lavire and Joelle Marechal and Michele Martinez and Mastronunzio, {Juliana E.} and Mullin, {Beth C.} and James Niemann and Pierre Pujic and Tania Rawnsley and Zoe Rouy and Chantal Schenowitz and Anita Sellstedt and Fernando Tavares and Tomkins, {Jeffrey P.} and David Vallenet and Claudio Valverde and Wall, {Luis G.} and Ying Wang and Claudine Medigue and Benson, {David R.}",
year = "2007",
month = jan,
doi = "10.1101/gr.5798407",
language = "English",
volume = "17",
pages = "7--15",
journal = "Genome Research",
issn = "1088-9051",
publisher = "Cold Spring Harbor Laboratory ",
number = "1",

}

RIS

TY - JOUR

T1 - Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography

AU - Normand, Philippe

AU - Lapierre, Pascal

AU - Tisa, Louis S.

AU - Gogarten, Johann Peter

AU - Alloisio, Nicole

AU - Bagnarol, Emilie

AU - Bassi, Carla A.

AU - Berry, Alison M.

AU - Bickhart, Derek M.

AU - Choisne, Nathalie

AU - Couloux, Arnaud

AU - Cournoyer, Benoit

AU - Cruveiller, Stephane

AU - Daubin, Vincent

AU - Demange, Nadia

AU - Francino, Maria Pilar

AU - Goltsman, Eugene

AU - Huang, Ying

AU - Kopp, Olga R.

AU - Labarre, Laurent

AU - Lapidus, Alla

AU - Lavire, Celine

AU - Marechal, Joelle

AU - Martinez, Michele

AU - Mastronunzio, Juliana E.

AU - Mullin, Beth C.

AU - Niemann, James

AU - Pujic, Pierre

AU - Rawnsley, Tania

AU - Rouy, Zoe

AU - Schenowitz, Chantal

AU - Sellstedt, Anita

AU - Tavares, Fernando

AU - Tomkins, Jeffrey P.

AU - Vallenet, David

AU - Valverde, Claudio

AU - Wall, Luis G.

AU - Wang, Ying

AU - Medigue, Claudine

AU - Benson, David R.

PY - 2007/1

Y1 - 2007/1

N2 - Soil bacteria that also form mutualistic symbioses in plants encounter two major levels of selection. One occurs during adaptation to and survival in soil, and the other occurs in concert with host plant speciation and adaptation. Actinobacteria from the genus Frankia are facultative symbionts that form N 2-fixing root nodules on diverse and globally distributed angiosperms in the "actinorhizal" symbioses. Three closely related clades of Frankia sp. strains are recognized; members of each clade infect a subset of plants from among eight angiosperm families. We sequenced the genomes from three strains; their sizes varied from 5.43 Mbp for a narrow host range strain (Frankia sp. strain HFPCcI3) to 7.50 Mbp for a medium host range strain (Frankia alni strain ACN14a) to 9.04 Mbp for a broad host range strain (Frankia sp. strain EAN1pec.) This size divergence is the largest yet reported for such closely related soil bacteria (97.8%-98.9% identity of 16S rRNA genes). The extent of gene deletion, duplication, and acquisition is in concert with the biogeographic history of the symbioses and host plant speciation. Host plant isolation favored genome contraction, whereas host plant diversification favored genome expansion. The results support the idea that major genome expansions as well as reductions can occur in facultative symbiotic soil bacteria as they respond to new environments in the context of their symbioses.

AB - Soil bacteria that also form mutualistic symbioses in plants encounter two major levels of selection. One occurs during adaptation to and survival in soil, and the other occurs in concert with host plant speciation and adaptation. Actinobacteria from the genus Frankia are facultative symbionts that form N 2-fixing root nodules on diverse and globally distributed angiosperms in the "actinorhizal" symbioses. Three closely related clades of Frankia sp. strains are recognized; members of each clade infect a subset of plants from among eight angiosperm families. We sequenced the genomes from three strains; their sizes varied from 5.43 Mbp for a narrow host range strain (Frankia sp. strain HFPCcI3) to 7.50 Mbp for a medium host range strain (Frankia alni strain ACN14a) to 9.04 Mbp for a broad host range strain (Frankia sp. strain EAN1pec.) This size divergence is the largest yet reported for such closely related soil bacteria (97.8%-98.9% identity of 16S rRNA genes). The extent of gene deletion, duplication, and acquisition is in concert with the biogeographic history of the symbioses and host plant speciation. Host plant isolation favored genome contraction, whereas host plant diversification favored genome expansion. The results support the idea that major genome expansions as well as reductions can occur in facultative symbiotic soil bacteria as they respond to new environments in the context of their symbioses.

UR - http://www.scopus.com/inward/record.url?scp=33845974881&partnerID=8YFLogxK

U2 - 10.1101/gr.5798407

DO - 10.1101/gr.5798407

M3 - Article

C2 - 17151343

AN - SCOPUS:33845974881

VL - 17

SP - 7

EP - 15

JO - Genome Research

JF - Genome Research

SN - 1088-9051

IS - 1

ER -

ID: 90037065