DOI

This paper presents performance results for parallel algorithms that compute the longest common subsequence of two strings. This algorithm is a representative of a class of algorithms that compute string to string distances and has computational complexity O(n2). The parallel algorithm uses a variable grid size, runs in O(p) supersteps (synchronization phases) and has linear communication costs. We study this algorithm in BSP context, give runtime estimations and compare the predictions to experimental values measured on three different parallel architectures, using different BSP programming libraries and an efficient implementation for sequential computation. We find that using the BSP model and the appropriate optimized BSP library improves the performance over plain MPI, and that scalability can be improved by using a tuned grid size parameter. © Springer-Verlag Berlin Heidelberg 2006.
Original languageEnglish
Title of host publicationComputational Science and Its Applications - ICCSA 2006 (ICCSA 2006)
Pages165-174
Number of pages10
DOIs
StatePublished - 1 Jan 2006

Publication series

NameLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
PublisherSpringer Nature
Volume3984
ISSN (Print)0302-9743

ID: 127757490