Standard

Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2 T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family alicyclobacillaceae da Costa and Rainey, 2010. / Klenk, Hans Peter; Lapidus, Alla; Chertkov, Olga; Copeland, Alex; del Rio, Glavina Tijana; Nolan, Matt; Lucas, Susan; Chen, Feng; Tice, Hope; Cheng, Jan Fang; Han, Cliff; Bruce, David; Goodwin, Lynne; Pitluck, Sam; Pati, Amrita; Mavromatis, Konstantinos; Daum, Chris; Chen, Amy; Palaniappan, Krishna; Chang, Yun Juan; Land, Miriam; Hauser, Loren; Jeffries, Cynthia D.; Detter, John C.; Rohde, Manfred; Abt, Birte; Pukall, Rüdiger; Göker, Markus; Bristow, James; Markowitz, Victor; Hugenholtz, Philip; Eisen, Jonathan A.

In: Standards in Genomic Sciences, Vol. 5, No. 1, 31.10.2011.

Research output: Contribution to journal › Article › peer-review

Harvard

Klenk, HP, Lapidus, A, Chertkov, O, Copeland, A, del Rio, GT, Nolan, M, Lucas, S, Chen, F, Tice, H, Cheng, JF, Han, C, Bruce, D, Goodwin, L, Pitluck, S, Pati, A, Mavromatis, K, Daum, C, Chen, A, Palaniappan, K, Chang, YJ, Land, M, Hauser, L, Jeffries, CD, Detter, JC, Rohde, M, Abt, B, Pukall, R, Göker, M, Bristow, J, Markowitz, V, Hugenholtz, P & Eisen, JA 2011, 'Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2 T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family alicyclobacillaceae da Costa and Rainey, 2010', Standards in Genomic Sciences, vol. 5, no. 1. https://doi.org/10.4056/sigs.2144922

APA

Klenk, H. P., Lapidus, A., Chertkov, O., Copeland, A., del Rio, G. T., Nolan, M., Lucas, S., Chen, F., Tice, H., Cheng, J. F., Han, C., Bruce, D., Goodwin, L., Pitluck, S., Pati, A., Mavromatis, K., Daum, C., Chen, A., Palaniappan, K., ... Eisen, J. A. (2011). Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2 T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family alicyclobacillaceae da Costa and Rainey, 2010. Standards in Genomic Sciences, 5(1). https://doi.org/10.4056/sigs.2144922

Vancouver

Klenk HP, Lapidus A, Chertkov O, Copeland A, del Rio GT, Nolan M et al. Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2 T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family alicyclobacillaceae da Costa and Rainey, 2010. Standards in Genomic Sciences. 2011 Oct 31;5(1). https://doi.org/10.4056/sigs.2144922

Author

Klenk, Hans Peter ; Lapidus, Alla ; Chertkov, Olga ; Copeland, Alex ; del Rio, Glavina Tijana ; Nolan, Matt ; Lucas, Susan ; Chen, Feng ; Tice, Hope ; Cheng, Jan Fang ; Han, Cliff ; Bruce, David ; Goodwin, Lynne ; Pitluck, Sam ; Pati, Amrita ; Mavromatis, Konstantinos ; Daum, Chris ; Chen, Amy ; Palaniappan, Krishna ; Chang, Yun Juan ; Land, Miriam ; Hauser, Loren ; Jeffries, Cynthia D. ; Detter, John C. ; Rohde, Manfred ; Abt, Birte ; Pukall, Rüdiger ; Göker, Markus ; Bristow, James ; Markowitz, Victor ; Hugenholtz, Philip ; Eisen, Jonathan A. / Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2 T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family alicyclobacillaceae da Costa and Rainey, 2010. In: Standards in Genomic Sciences. 2011 ; Vol. 5, No. 1.

BibTeX

@article{17b7d8fedbd64f89bd409590ac84451f,
title = "Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2 T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family alicyclobacillaceae da Costa and Rainey, 2010",
abstract = "Bacillus tusciae Bonjour & Aragno 1994 is a hydrogen-oxidizing, thermoacidophilic spore former that lives as a facultative chemolithoautotroph in solfataras. Although 16S rRNA gene sequencing was well established at the time of the initial description of the organism, 16S sequence data were not available and the strain was placed into the genus Bacillus based on limited chemotaxonomic information. Despite the now obvious misplacement of strain T2 as a member of the genus Bacillus in 16S rRNA-based phylogenetic trees, the misclassification remained uncorrected for many years, which was likely due to the extremely difficult, analysis-hampering cultivation conditions and poor growth rate of the strain. Here we provide a taxonomic re-evaluation of strain T2T (= DSM 2912 = NBRC 15312) and propose its reclassification as the type strain of a new species, Kyrpidia tusciae, and the type species of the new genus Kyrpidia, which is a sister-group of Alicyclobacillus. The family Alicyclobacillaceae da Costa and Rainey, 2010 is emended. The 3,384,766 bp genome with its 3,323 protein-coding and 78 RNA genes is part of the GenomicEncyclopedia ofBacteria andArchaea project.",
keywords = "Aerobe, Bacillaceae, Facultative chemolithoautotroph, Free-living, GEBA, Hydrogen-oxidizing, Solfatara, Spore-forming, Thermoacidophile",
author = "Klenk, {Hans Peter} and Alla Lapidus and Olga Chertkov and Alex Copeland and {del Rio}, {Glavina Tijana} and Matt Nolan and Susan Lucas and Feng Chen and Hope Tice and Cheng, {Jan Fang} and Cliff Han and David Bruce and Lynne Goodwin and Sam Pitluck and Amrita Pati and Konstantinos Mavromatis and Chris Daum and Amy Chen and Krishna Palaniappan and Chang, {Yun Juan} and Miriam Land and Loren Hauser and Jeffries, {Cynthia D.} and Detter, {John C.} and Manfred Rohde and Birte Abt and R{\"u}diger Pukall and Markus G{\"o}ker and James Bristow and Victor Markowitz and Philip Hugenholtz and Eisen, {Jonathan A.}",
year = "2011",
month = oct,
day = "31",
doi = "10.4056/sigs.2144922",
language = "English",
volume = "5",
journal = "Standards in Genomic Sciences",
issn = "1944-3277",
publisher = "Michigan State University",
number = "1",

}

RIS

TY - JOUR

T1 - Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2 T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family alicyclobacillaceae da Costa and Rainey, 2010

AU - Klenk, Hans Peter

AU - Lapidus, Alla

AU - Chertkov, Olga

AU - Copeland, Alex

AU - del Rio, Glavina Tijana

AU - Nolan, Matt

AU - Lucas, Susan

AU - Chen, Feng

AU - Tice, Hope

AU - Cheng, Jan Fang

AU - Han, Cliff

AU - Bruce, David

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Pati, Amrita

AU - Mavromatis, Konstantinos

AU - Daum, Chris

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Chang, Yun Juan

AU - Land, Miriam

AU - Hauser, Loren

AU - Jeffries, Cynthia D.

AU - Detter, John C.

AU - Rohde, Manfred

AU - Abt, Birte

AU - Pukall, Rüdiger

AU - Göker, Markus

AU - Bristow, James

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Eisen, Jonathan A.

PY - 2011/10/31

Y1 - 2011/10/31

N2 - Bacillus tusciae Bonjour & Aragno 1994 is a hydrogen-oxidizing, thermoacidophilic spore former that lives as a facultative chemolithoautotroph in solfataras. Although 16S rRNA gene sequencing was well established at the time of the initial description of the organism, 16S sequence data were not available and the strain was placed into the genus Bacillus based on limited chemotaxonomic information. Despite the now obvious misplacement of strain T2 as a member of the genus Bacillus in 16S rRNA-based phylogenetic trees, the misclassification remained uncorrected for many years, which was likely due to the extremely difficult, analysis-hampering cultivation conditions and poor growth rate of the strain. Here we provide a taxonomic re-evaluation of strain T2T (= DSM 2912 = NBRC 15312) and propose its reclassification as the type strain of a new species, Kyrpidia tusciae, and the type species of the new genus Kyrpidia, which is a sister-group of Alicyclobacillus. The family Alicyclobacillaceae da Costa and Rainey, 2010 is emended. The 3,384,766 bp genome with its 3,323 protein-coding and 78 RNA genes is part of the GenomicEncyclopedia ofBacteria andArchaea project.

AB - Bacillus tusciae Bonjour & Aragno 1994 is a hydrogen-oxidizing, thermoacidophilic spore former that lives as a facultative chemolithoautotroph in solfataras. Although 16S rRNA gene sequencing was well established at the time of the initial description of the organism, 16S sequence data were not available and the strain was placed into the genus Bacillus based on limited chemotaxonomic information. Despite the now obvious misplacement of strain T2 as a member of the genus Bacillus in 16S rRNA-based phylogenetic trees, the misclassification remained uncorrected for many years, which was likely due to the extremely difficult, analysis-hampering cultivation conditions and poor growth rate of the strain. Here we provide a taxonomic re-evaluation of strain T2T (= DSM 2912 = NBRC 15312) and propose its reclassification as the type strain of a new species, Kyrpidia tusciae, and the type species of the new genus Kyrpidia, which is a sister-group of Alicyclobacillus. The family Alicyclobacillaceae da Costa and Rainey, 2010 is emended. The 3,384,766 bp genome with its 3,323 protein-coding and 78 RNA genes is part of the GenomicEncyclopedia ofBacteria andArchaea project.

KW - Aerobe

KW - Bacillaceae

KW - Facultative chemolithoautotroph

KW - Free-living

KW - GEBA

KW - Hydrogen-oxidizing

KW - Solfatara

KW - Spore-forming

KW - Thermoacidophile

UR - http://www.scopus.com/inward/record.url?scp=84861342725&partnerID=8YFLogxK

U2 - 10.4056/sigs.2144922

DO - 10.4056/sigs.2144922

M3 - Article

AN - SCOPUS:84861342725

VL - 5

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

SN - 1944-3277

IS - 1

ER -

ID: 41305414