Standard

Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022 T). / Pati, Amrita; la Butti, Kurt; Pukall, Rüdiger; Nolan, Matt; del Rio, Tijana Glavina; Tice, Hope; Cheng, Jan Fang; Lucas, Susan; Chen, Feng; Copeland, Alex; Mavromatis, Konstantinos; Pitluck, Sam; Bruce, David; Goodwin, Lynne; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Chen, Amy; Palaniappan, Krishna; Chain, Patrick; Brettin, Thomas; Sikorski, Johannes; Rohde, Manfred; Göker, Markus; Bristow, Jim; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter; Lapidus, Alla.

In: Standards in Genomic Sciences, Vol. 2, No. 1, 2010, p. 49-56.

Research output: Contribution to journal › Article › peer-review

Harvard

Pati, A, la Butti, K, Pukall, R, Nolan, M, del Rio, TG, Tice, H, Cheng, JF, Lucas, S, Chen, F, Copeland, A, Mavromatis, K, Pitluck, S, Bruce, D, Goodwin, L, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Chen, A, Palaniappan, K, Chain, P, Brettin, T, Sikorski, J, Rohde, M, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP & Lapidus, A 2010, 'Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022 T)', Standards in Genomic Sciences, vol. 2, no. 1, pp. 49-56. https://doi.org/10.4056/sigs.601105

APA

Pati, A., la Butti, K., Pukall, R., Nolan, M., del Rio, T. G., Tice, H., Cheng, J. F., Lucas, S., Chen, F., Copeland, A., Mavromatis, K., Pitluck, S., Bruce, D., Goodwin, L., Land, M., Hauser, L., Chang, Y. J., Jeffries, C. D., Chen, A., ... Lapidus, A. (2010). Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022 T). Standards in Genomic Sciences, 2(1), 49-56. https://doi.org/10.4056/sigs.601105

Vancouver

Pati A, la Butti K, Pukall R, Nolan M, del Rio TG, Tice H et al. Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022 T). Standards in Genomic Sciences. 2010;2(1):49-56. https://doi.org/10.4056/sigs.601105

Author

Pati, Amrita ; la Butti, Kurt ; Pukall, Rüdiger ; Nolan, Matt ; del Rio, Tijana Glavina ; Tice, Hope ; Cheng, Jan Fang ; Lucas, Susan ; Chen, Feng ; Copeland, Alex ; Mavromatis, Konstantinos ; Pitluck, Sam ; Bruce, David ; Goodwin, Lynne ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Chen, Amy ; Palaniappan, Krishna ; Chain, Patrick ; Brettin, Thomas ; Sikorski, Johannes ; Rohde, Manfred ; Göker, Markus ; Bristow, Jim ; Eisen, Jonathan A. ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter ; Lapidus, Alla. / Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022 T). In: Standards in Genomic Sciences. 2010 ; Vol. 2, No. 1. pp. 49-56.

BibTeX

@article{f63c64f45970482fb5353996ba7a01ea,
title = "Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022 T)",
abstract = "Sphaerobacter thermophilus Demharter et al. 1989 is the sole and type species of the genus Sphaerobacter, which is the type genus of the family Sphaerobacteraceae, the order Sphaerobacterales and the subclass Sphaerobacteridae. Phylogenetically, it belongs to the genomically little studied class of the Thermomicrobia in the bacterial phylum Chloroflexi. Here, the genome of strain S 6022 T is described which is an obligate aerobe that was originally isolated from an aerated laboratory-scale fermentor that was pulse fed with municipal sewage sludge. We describe the features of this organism, together with the complete genome and annotation. This is the first complete genome sequence of the thermomicrobial subclass Sphaerobacteridae, and the second sequence from the chloroflexal class Thermomicrobia. The 3,993,764 bp genome with its 3,525 protein-coding and 57 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.",
keywords = "GEBA, Non-motile, Non-sporeforming, Obligate aerobic, Pleomorphic, Sewage sludge isolate, Sphaerobacteridae, Thermomicrobia, Thermophile",
author = "Amrita Pati and {la Butti}, Kurt and R{\"u}diger Pukall and Matt Nolan and {del Rio}, {Tijana Glavina} and Hope Tice and Cheng, {Jan Fang} and Susan Lucas and Feng Chen and Alex Copeland and Konstantinos Mavromatis and Sam Pitluck and David Bruce and Lynne Goodwin and Miriam Land and Loren Hauser and Chang, {Yun Juan} and Jeffries, {Cynthia D.} and Amy Chen and Krishna Palaniappan and Patrick Chain and Thomas Brettin and Johannes Sikorski and Manfred Rohde and Markus G{\"o}ker and Jim Bristow and Eisen, {Jonathan A.} and Victor Markowitz and Philip Hugenholtz and Kyrpides, {Nikos C.} and Klenk, {Hans Peter} and Alla Lapidus",
note = "Funding Information: We would like to gratefully acknowledge the help of Gabriele Gehrich-Schr{\"o}ter for growing S. thermophilus cultures and Susanne Schneider for DNA extraction and quality analysis (both at DSMZ). This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program, and by the University of California,",
year = "2010",
doi = "10.4056/sigs.601105",
language = "English",
volume = "2",
pages = "49--56",
journal = "Standards in Genomic Sciences",
issn = "1944-3277",
publisher = "Michigan State University",
number = "1",

}

RIS

TY - JOUR

T1 - Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022 T)

AU - Pati, Amrita

AU - la Butti, Kurt

AU - Pukall, Rüdiger

AU - Nolan, Matt

AU - del Rio, Tijana Glavina

AU - Tice, Hope

AU - Cheng, Jan Fang

AU - Lucas, Susan

AU - Chen, Feng

AU - Copeland, Alex

AU - Mavromatis, Konstantinos

AU - Pitluck, Sam

AU - Bruce, David

AU - Goodwin, Lynne

AU - Land, Miriam

AU - Hauser, Loren

AU - Chang, Yun Juan

AU - Jeffries, Cynthia D.

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Chain, Patrick

AU - Brettin, Thomas

AU - Sikorski, Johannes

AU - Rohde, Manfred

AU - Göker, Markus

AU - Bristow, Jim

AU - Eisen, Jonathan A.

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

AU - Lapidus, Alla

N1 - Funding Information: We would like to gratefully acknowledge the help of Gabriele Gehrich-Schröter for growing S. thermophilus cultures and Susanne Schneider for DNA extraction and quality analysis (both at DSMZ). This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program, and by the University of California,

PY - 2010

Y1 - 2010

N2 - Sphaerobacter thermophilus Demharter et al. 1989 is the sole and type species of the genus Sphaerobacter, which is the type genus of the family Sphaerobacteraceae, the order Sphaerobacterales and the subclass Sphaerobacteridae. Phylogenetically, it belongs to the genomically little studied class of the Thermomicrobia in the bacterial phylum Chloroflexi. Here, the genome of strain S 6022 T is described which is an obligate aerobe that was originally isolated from an aerated laboratory-scale fermentor that was pulse fed with municipal sewage sludge. We describe the features of this organism, together with the complete genome and annotation. This is the first complete genome sequence of the thermomicrobial subclass Sphaerobacteridae, and the second sequence from the chloroflexal class Thermomicrobia. The 3,993,764 bp genome with its 3,525 protein-coding and 57 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Sphaerobacter thermophilus Demharter et al. 1989 is the sole and type species of the genus Sphaerobacter, which is the type genus of the family Sphaerobacteraceae, the order Sphaerobacterales and the subclass Sphaerobacteridae. Phylogenetically, it belongs to the genomically little studied class of the Thermomicrobia in the bacterial phylum Chloroflexi. Here, the genome of strain S 6022 T is described which is an obligate aerobe that was originally isolated from an aerated laboratory-scale fermentor that was pulse fed with municipal sewage sludge. We describe the features of this organism, together with the complete genome and annotation. This is the first complete genome sequence of the thermomicrobial subclass Sphaerobacteridae, and the second sequence from the chloroflexal class Thermomicrobia. The 3,993,764 bp genome with its 3,525 protein-coding and 57 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - GEBA

KW - Non-motile

KW - Non-sporeforming

KW - Obligate aerobic

KW - Pleomorphic

KW - Sewage sludge isolate

KW - Sphaerobacteridae

KW - Thermomicrobia

KW - Thermophile

UR - http://www.scopus.com/inward/record.url?scp=80053460472&partnerID=8YFLogxK

U2 - 10.4056/sigs.601105

DO - 10.4056/sigs.601105

M3 - Article

AN - SCOPUS:80053460472

VL - 2

SP - 49

EP - 56

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

SN - 1944-3277

IS - 1

ER -

ID: 87745727