Standard

Complete genome sequence of Slackia heliotrinireducens type strain (RHS T). / Pukall, Rüdiger; Lapidus, Alla; Nolan, Matt; Copeland, Alex; del Rio, Tijana Glavina; Lucas, Susan; Chen, Feng; Tice, Hope; Cheng, Jan Fang; Chertkov, Olga; Bruce, David; Goodwin, Lynne; Kuske, Cheryl; Brettin, Thomas; Detter, John C.; Han, Cliff; Pitluck, Sam; Pati, Amrita; Mavrommatis, Konstantinos; Ovchinnikova, Galina; Chen, Amy; Palaniappan, Krishna; Schneider, Susanne; Rohde, Manfred; Chain, Patrick; D'haeseleer, Patrik; Göker, Markus; Bristow, James; Eisen, Jonathan A.; Markowitz, Victor; Kyrpides, Nikos C.; Klenk, Hans Peter; Hugenholtz, Philip.

In: Standards in Genomic Sciences, Vol. 1, No. 3, 2009, p. 234-241.

Research output: Contribution to journal › Article › peer-review

Harvard

Pukall, R, Lapidus, A, Nolan, M, Copeland, A, del Rio, TG, Lucas, S, Chen, F, Tice, H, Cheng, JF, Chertkov, O, Bruce, D, Goodwin, L, Kuske, C, Brettin, T, Detter, JC, Han, C, Pitluck, S, Pati, A, Mavrommatis, K, Ovchinnikova, G, Chen, A, Palaniappan, K, Schneider, S, Rohde, M, Chain, P, D'haeseleer, P, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Kyrpides, NC, Klenk, HP & Hugenholtz, P 2009, 'Complete genome sequence of Slackia heliotrinireducens type strain (RHS T)', Standards in Genomic Sciences, vol. 1, no. 3, pp. 234-241. https://doi.org/10.4056/sigs.37633

APA

Pukall, R., Lapidus, A., Nolan, M., Copeland, A., del Rio, T. G., Lucas, S., Chen, F., Tice, H., Cheng, J. F., Chertkov, O., Bruce, D., Goodwin, L., Kuske, C., Brettin, T., Detter, J. C., Han, C., Pitluck, S., Pati, A., Mavrommatis, K., ... Hugenholtz, P. (2009). Complete genome sequence of Slackia heliotrinireducens type strain (RHS T). Standards in Genomic Sciences, 1(3), 234-241. https://doi.org/10.4056/sigs.37633

Vancouver

Pukall R, Lapidus A, Nolan M, Copeland A, del Rio TG, Lucas S et al. Complete genome sequence of Slackia heliotrinireducens type strain (RHS T). Standards in Genomic Sciences. 2009;1(3):234-241. https://doi.org/10.4056/sigs.37633

Author

Pukall, Rüdiger ; Lapidus, Alla ; Nolan, Matt ; Copeland, Alex ; del Rio, Tijana Glavina ; Lucas, Susan ; Chen, Feng ; Tice, Hope ; Cheng, Jan Fang ; Chertkov, Olga ; Bruce, David ; Goodwin, Lynne ; Kuske, Cheryl ; Brettin, Thomas ; Detter, John C. ; Han, Cliff ; Pitluck, Sam ; Pati, Amrita ; Mavrommatis, Konstantinos ; Ovchinnikova, Galina ; Chen, Amy ; Palaniappan, Krishna ; Schneider, Susanne ; Rohde, Manfred ; Chain, Patrick ; D'haeseleer, Patrik ; Göker, Markus ; Bristow, James ; Eisen, Jonathan A. ; Markowitz, Victor ; Kyrpides, Nikos C. ; Klenk, Hans Peter ; Hugenholtz, Philip. / Complete genome sequence of Slackia heliotrinireducens type strain (RHS T). In: Standards in Genomic Sciences. 2009 ; Vol. 1, No. 3. pp. 234-241.

BibTeX

@article{fac720d3efd84f86b0515ed9c9089c17,
title = "Complete genome sequence of Slackia heliotrinireducens type strain (RHS T)",
abstract = "Slackia heliotrinireducens (Lanigan 1983) Wade et al. 1999 is of phylogenetic interest because of its location in a genomically yet uncharted section of the family Coriobacteriaceae, within the deep branching Actinobacteria. Strain RHS 1 T was originally isolated from the ruminal flora of a sheep. It is a proteolytic anaerobic coccus, able to reductively cleave pyrrolizidine alkaloids. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the genus Slackia, and the 3,165,038 bp long single replicon genome with its 2798 protein-coding and 60 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.",
keywords = "Anaerobic, Asaccharolytic, Coriobacteriaceae, Gram-positive coccus, Pyrrolizidine alkaloids",
author = "R{\"u}diger Pukall and Alla Lapidus and Matt Nolan and Alex Copeland and {del Rio}, {Tijana Glavina} and Susan Lucas and Feng Chen and Hope Tice and Cheng, {Jan Fang} and Olga Chertkov and David Bruce and Lynne Goodwin and Cheryl Kuske and Thomas Brettin and Detter, {John C.} and Cliff Han and Sam Pitluck and Amrita Pati and Konstantinos Mavrommatis and Galina Ovchinnikova and Amy Chen and Krishna Palaniappan and Susanne Schneider and Manfred Rohde and Patrick Chain and Patrik D'haeseleer and Markus G{\"o}ker and James Bristow and Eisen, {Jonathan A.} and Victor Markowitz and Kyrpides, {Nikos C.} and Klenk, {Hans Peter} and Philip Hugenholtz",
note = "Funding Information: We would like to gratefully acknowledge the help of Gabriele Gehrich-Schr{\"o}ter (DSMZ) for growing S. helio-trinireducens cultures. This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence",
year = "2009",
doi = "10.4056/sigs.37633",
language = "English",
volume = "1",
pages = "234--241",
journal = "Standards in Genomic Sciences",
issn = "1944-3277",
publisher = "Michigan State University",
number = "3",

}

RIS

TY - JOUR

T1 - Complete genome sequence of Slackia heliotrinireducens type strain (RHS T)

AU - Pukall, Rüdiger

AU - Lapidus, Alla

AU - Nolan, Matt

AU - Copeland, Alex

AU - del Rio, Tijana Glavina

AU - Lucas, Susan

AU - Chen, Feng

AU - Tice, Hope

AU - Cheng, Jan Fang

AU - Chertkov, Olga

AU - Bruce, David

AU - Goodwin, Lynne

AU - Kuske, Cheryl

AU - Brettin, Thomas

AU - Detter, John C.

AU - Han, Cliff

AU - Pitluck, Sam

AU - Pati, Amrita

AU - Mavrommatis, Konstantinos

AU - Ovchinnikova, Galina

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Schneider, Susanne

AU - Rohde, Manfred

AU - Chain, Patrick

AU - D'haeseleer, Patrik

AU - Göker, Markus

AU - Bristow, James

AU - Eisen, Jonathan A.

AU - Markowitz, Victor

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

AU - Hugenholtz, Philip

N1 - Funding Information: We would like to gratefully acknowledge the help of Gabriele Gehrich-Schröter (DSMZ) for growing S. helio-trinireducens cultures. This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence

PY - 2009

Y1 - 2009

N2 - Slackia heliotrinireducens (Lanigan 1983) Wade et al. 1999 is of phylogenetic interest because of its location in a genomically yet uncharted section of the family Coriobacteriaceae, within the deep branching Actinobacteria. Strain RHS 1 T was originally isolated from the ruminal flora of a sheep. It is a proteolytic anaerobic coccus, able to reductively cleave pyrrolizidine alkaloids. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the genus Slackia, and the 3,165,038 bp long single replicon genome with its 2798 protein-coding and 60 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Slackia heliotrinireducens (Lanigan 1983) Wade et al. 1999 is of phylogenetic interest because of its location in a genomically yet uncharted section of the family Coriobacteriaceae, within the deep branching Actinobacteria. Strain RHS 1 T was originally isolated from the ruminal flora of a sheep. It is a proteolytic anaerobic coccus, able to reductively cleave pyrrolizidine alkaloids. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the genus Slackia, and the 3,165,038 bp long single replicon genome with its 2798 protein-coding and 60 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - Anaerobic

KW - Asaccharolytic

KW - Coriobacteriaceae

KW - Gram-positive coccus

KW - Pyrrolizidine alkaloids

UR - http://www.scopus.com/inward/record.url?scp=80053454751&partnerID=8YFLogxK

U2 - 10.4056/sigs.37633

DO - 10.4056/sigs.37633

M3 - Article

AN - SCOPUS:80053454751

VL - 1

SP - 234

EP - 241

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

SN - 1944-3277

IS - 3

ER -

ID: 90138018