Standard

Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134 T). / Pukall, Rüdiger; Gehrich-Schröter, Gabriele; Lapidus, Alla; Nolan, Matt; del Rio, Tijana Glavina; Lucas, Susan; Chen, Feng; Tice, Hope; Pitluck, Sam; Cheng, Jan Fang; Copeland, Alex; Saunders, Elizabeth; Brettin, Thomas; Detter, John C.; Bruce, David; Goodwin, Lynne; Pati, Amrita; Mavrommatis, Konstantinos; Ovchinnikova, Galina; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Chain, Patrick; Göker, Markus; Bristow, Jim; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter; Han, Cliff.

In: Standards in Genomic Sciences, Vol. 1, No. 3, 2009, p. 262-269.

Research output: Contribution to journal › Article › peer-review

Harvard

Pukall, R, Gehrich-Schröter, G, Lapidus, A, Nolan, M, del Rio, TG, Lucas, S, Chen, F, Tice, H, Pitluck, S, Cheng, JF, Copeland, A, Saunders, E, Brettin, T, Detter, JC, Bruce, D, Goodwin, L, Pati, A, Mavrommatis, K, Ovchinnikova, G, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Chain, P, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP & Han, C 2009, 'Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134 T)', Standards in Genomic Sciences, vol. 1, no. 3, pp. 262-269. https://doi.org/10.4056/sigs.41646

APA

Pukall, R., Gehrich-Schröter, G., Lapidus, A., Nolan, M., del Rio, T. G., Lucas, S., Chen, F., Tice, H., Pitluck, S., Cheng, J. F., Copeland, A., Saunders, E., Brettin, T., Detter, J. C., Bruce, D., Goodwin, L., Pati, A., Mavrommatis, K., Ovchinnikova, G., ... Han, C. (2009). Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134 T). Standards in Genomic Sciences, 1(3), 262-269. https://doi.org/10.4056/sigs.41646

Vancouver

Pukall R, Gehrich-Schröter G, Lapidus A, Nolan M, del Rio TG, Lucas S et al. Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134 T). Standards in Genomic Sciences. 2009;1(3):262-269. https://doi.org/10.4056/sigs.41646

Author

Pukall, Rüdiger ; Gehrich-Schröter, Gabriele ; Lapidus, Alla ; Nolan, Matt ; del Rio, Tijana Glavina ; Lucas, Susan ; Chen, Feng ; Tice, Hope ; Pitluck, Sam ; Cheng, Jan Fang ; Copeland, Alex ; Saunders, Elizabeth ; Brettin, Thomas ; Detter, John C. ; Bruce, David ; Goodwin, Lynne ; Pati, Amrita ; Mavrommatis, Konstantinos ; Ovchinnikova, Galina ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Chain, Patrick ; Göker, Markus ; Bristow, Jim ; Eisen, Jonathan A. ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter ; Han, Cliff. / Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134 T). In: Standards in Genomic Sciences. 2009 ; Vol. 1, No. 3. pp. 262-269.

BibTeX

@article{0cfe6f156c6c4c2a9ba5af0be2431e1f,
title = "Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134 T)",
abstract = "Jonesia denitrificans (Prevot 1961) Rocourt et al. 1987 is the type species of the genus Jonesia, and is of phylogenetic interest because of its isolated location in the actinobacterial suborder Micrococcineae. J. denitrificans is characterized by a typical coryneform morphology and is able to form irregular nonsporulating rods showing branched and club-like forms. Coccoid cells occur in older cultures. J. denitrificans is classified as a pathogenic organism for animals (vertebrates). The type strain whose genome is described here was originally isolated from cooked ox blood. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence of a member of the genus for which a complete genome sequence is described. The 2,749,646 bp long genome with its 2558 protein-coding and 71 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.",
keywords = "Actinobacteria, Actinomycetales, Gram-positive, Irregular, Jonesiaceae, Micrococcineae, Nonsporulating rods, Ox blood",
author = "R{\"u}diger Pukall and Gabriele Gehrich-Schr{\"o}ter and Alla Lapidus and Matt Nolan and {del Rio}, {Tijana Glavina} and Susan Lucas and Feng Chen and Hope Tice and Sam Pitluck and Cheng, {Jan Fang} and Alex Copeland and Elizabeth Saunders and Thomas Brettin and Detter, {John C.} and David Bruce and Lynne Goodwin and Amrita Pati and Konstantinos Mavrommatis and Galina Ovchinnikova and Amy Chen and Krishna Palaniappan and Miriam Land and Loren Hauser and Chang, {Yun Juan} and Jeffries, {Cynthia D.} and Patrick Chain and Markus G{\"o}ker and Jim Bristow and Eisen, {Jonathan A.} and Victor Markowitz and Philip Hugenholtz and Kyrpides, {Nikos C.} and Klenk, {Hans Peter} and Cliff Han",
note = "Funding Information: We gratefully acknowledge the help of Susanne Schneider (DSMZ) for DNA extraction and quality analysis. This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National",
year = "2009",
doi = "10.4056/sigs.41646",
language = "English",
volume = "1",
pages = "262--269",
journal = "Standards in Genomic Sciences",
issn = "1944-3277",
publisher = "Michigan State University",
number = "3",

}

RIS

TY - JOUR

T1 - Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134 T)

AU - Pukall, Rüdiger

AU - Gehrich-Schröter, Gabriele

AU - Lapidus, Alla

AU - Nolan, Matt

AU - del Rio, Tijana Glavina

AU - Lucas, Susan

AU - Chen, Feng

AU - Tice, Hope

AU - Pitluck, Sam

AU - Cheng, Jan Fang

AU - Copeland, Alex

AU - Saunders, Elizabeth

AU - Brettin, Thomas

AU - Detter, John C.

AU - Bruce, David

AU - Goodwin, Lynne

AU - Pati, Amrita

AU - Mavrommatis, Konstantinos

AU - Ovchinnikova, Galina

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Land, Miriam

AU - Hauser, Loren

AU - Chang, Yun Juan

AU - Jeffries, Cynthia D.

AU - Chain, Patrick

AU - Göker, Markus

AU - Bristow, Jim

AU - Eisen, Jonathan A.

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

AU - Han, Cliff

N1 - Funding Information: We gratefully acknowledge the help of Susanne Schneider (DSMZ) for DNA extraction and quality analysis. This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National

PY - 2009

Y1 - 2009

N2 - Jonesia denitrificans (Prevot 1961) Rocourt et al. 1987 is the type species of the genus Jonesia, and is of phylogenetic interest because of its isolated location in the actinobacterial suborder Micrococcineae. J. denitrificans is characterized by a typical coryneform morphology and is able to form irregular nonsporulating rods showing branched and club-like forms. Coccoid cells occur in older cultures. J. denitrificans is classified as a pathogenic organism for animals (vertebrates). The type strain whose genome is described here was originally isolated from cooked ox blood. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence of a member of the genus for which a complete genome sequence is described. The 2,749,646 bp long genome with its 2558 protein-coding and 71 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Jonesia denitrificans (Prevot 1961) Rocourt et al. 1987 is the type species of the genus Jonesia, and is of phylogenetic interest because of its isolated location in the actinobacterial suborder Micrococcineae. J. denitrificans is characterized by a typical coryneform morphology and is able to form irregular nonsporulating rods showing branched and club-like forms. Coccoid cells occur in older cultures. J. denitrificans is classified as a pathogenic organism for animals (vertebrates). The type strain whose genome is described here was originally isolated from cooked ox blood. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence of a member of the genus for which a complete genome sequence is described. The 2,749,646 bp long genome with its 2558 protein-coding and 71 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - Actinobacteria

KW - Actinomycetales

KW - Gram-positive

KW - Irregular

KW - Jonesiaceae

KW - Micrococcineae

KW - Nonsporulating rods

KW - Ox blood

UR - http://www.scopus.com/inward/record.url?scp=80053439069&partnerID=8YFLogxK

U2 - 10.4056/sigs.41646

DO - 10.4056/sigs.41646

M3 - Article

AN - SCOPUS:80053439069

VL - 1

SP - 262

EP - 269

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

SN - 1944-3277

IS - 3

ER -

ID: 90138492