Standard

Complete genome sequence of Intrasporangium calvum type strain (7 KIP T). / del Rio, Tijana Glavina; Chertkov, Olga; Yasawong, Montri; Lucas, Susan; Deshpande, Shweta; Cheng, Jan Fang; Detter, Chris; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Mavromatis, Konstantinos; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Rohde, Manfred; Pukall, Rüdiger; Sikorski, Johannes; Göker, Markus; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter; Lapidus, Alla.

In: Standards in Genomic Sciences, Vol. 3, No. 3, 2010, p. 294-303.

Research output: Contribution to journal › Article › peer-review

Harvard

del Rio, TG, Chertkov, O, Yasawong, M, Lucas, S, Deshpande, S, Cheng, JF, Detter, C, Tapia, R, Han, C, Goodwin, L, Pitluck, S, Liolios, K, Mavromatis, K, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Rohde, M, Pukall, R, Sikorski, J, Göker, M, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP & Lapidus, A 2010, 'Complete genome sequence of Intrasporangium calvum type strain (7 KIP T)', Standards in Genomic Sciences, vol. 3, no. 3, pp. 294-303. https://doi.org/10.4056/sigs.1263355

APA

del Rio, T. G., Chertkov, O., Yasawong, M., Lucas, S., Deshpande, S., Cheng, J. F., Detter, C., Tapia, R., Han, C., Goodwin, L., Pitluck, S., Liolios, K., Mavromatis, K., Pati, A., Chen, A., Palaniappan, K., Land, M., Hauser, L., Chang, Y. J., ... Lapidus, A. (2010). Complete genome sequence of Intrasporangium calvum type strain (7 KIP T). Standards in Genomic Sciences, 3(3), 294-303. https://doi.org/10.4056/sigs.1263355

Vancouver

del Rio TG, Chertkov O, Yasawong M, Lucas S, Deshpande S, Cheng JF et al. Complete genome sequence of Intrasporangium calvum type strain (7 KIP T). Standards in Genomic Sciences. 2010;3(3):294-303. https://doi.org/10.4056/sigs.1263355

Author

del Rio, Tijana Glavina ; Chertkov, Olga ; Yasawong, Montri ; Lucas, Susan ; Deshpande, Shweta ; Cheng, Jan Fang ; Detter, Chris ; Tapia, Roxanne ; Han, Cliff ; Goodwin, Lynne ; Pitluck, Sam ; Liolios, Konstantinos ; Mavromatis, Konstantinos ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Rohde, Manfred ; Pukall, Rüdiger ; Sikorski, Johannes ; Göker, Markus ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A. ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter ; Lapidus, Alla. / Complete genome sequence of Intrasporangium calvum type strain (7 KIP T). In: Standards in Genomic Sciences. 2010 ; Vol. 3, No. 3. pp. 294-303.

BibTeX

@article{6172e1684fdd422fad276bf17c07cafa,
title = "Complete genome sequence of Intrasporangium calvum type strain (7 KIP T)",
abstract = "Intrasporangium calvum Kalakoutskii et al. 1967 is the type species of the genus Intrasporangium, which belongs to the actinobacterial family Intrasporangiaceae. The species is a Grampositive bacterium that forms a branching mycelium, which tends to break into irregular fragments. The mycelium of this strain may bear intercalary vesicles but does not contain spores. The strain described in this study is an airborne organism that was isolated from a school dining room in 1967. One particularly interesting feature of I. calvum is that the type of its menaquinone is different from all other representatives of the family Intrasporangiaceae. This is the first completed genome sequence from a member of the genus Intrasporangium and also the first sequence from the family Intrasporangiaceae. The 4,024,382 bp long genome with its 3,653 protein-coding and 57 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.",
keywords = "Actinobacteria, Airborne, GEBA, Gram-positive, Intercalary vesicles, Intrasporangiaceae, Nocardioform, Non-motile",
author = "{del Rio}, {Tijana Glavina} and Olga Chertkov and Montri Yasawong and Susan Lucas and Shweta Deshpande and Cheng, {Jan Fang} and Chris Detter and Roxanne Tapia and Cliff Han and Lynne Goodwin and Sam Pitluck and Konstantinos Liolios and Konstantinos Mavromatis and Amrita Pati and Amy Chen and Krishna Palaniappan and Miriam Land and Loren Hauser and Chang, {Yun Juan} and Jeffries, {Cynthia D.} and Manfred Rohde and R{\"u}diger Pukall and Johannes Sikorski and Markus G{\"o}ker and Tanja Woyke and James Bristow and Eisen, {Jonathan A.} and Victor Markowitz and Philip Hugenholtz and Kyrpides, {Nikos C.} and Klenk, {Hans Peter} and Alla Lapidus",
note = "Funding Information: We would like to gratefully acknowledge the help of Gabriele Gehrich-Schr{\"o}ter for growing I. calvum cultures and Susanne Schneider for DNA extraction and quality analysis (both at DSMZ). This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National Laboratory under contract No. DE-AC02-05CH11231, Lawrence Livermore",
year = "2010",
doi = "10.4056/sigs.1263355",
language = "English",
volume = "3",
pages = "294--303",
journal = "Standards in Genomic Sciences",
issn = "1944-3277",
publisher = "Michigan State University",
number = "3",

}

RIS

TY - JOUR

T1 - Complete genome sequence of Intrasporangium calvum type strain (7 KIP T)

AU - del Rio, Tijana Glavina

AU - Chertkov, Olga

AU - Yasawong, Montri

AU - Lucas, Susan

AU - Deshpande, Shweta

AU - Cheng, Jan Fang

AU - Detter, Chris

AU - Tapia, Roxanne

AU - Han, Cliff

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Liolios, Konstantinos

AU - Mavromatis, Konstantinos

AU - Pati, Amrita

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Land, Miriam

AU - Hauser, Loren

AU - Chang, Yun Juan

AU - Jeffries, Cynthia D.

AU - Rohde, Manfred

AU - Pukall, Rüdiger

AU - Sikorski, Johannes

AU - Göker, Markus

AU - Woyke, Tanja

AU - Bristow, James

AU - Eisen, Jonathan A.

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

AU - Lapidus, Alla

N1 - Funding Information: We would like to gratefully acknowledge the help of Gabriele Gehrich-Schröter for growing I. calvum cultures and Susanne Schneider for DNA extraction and quality analysis (both at DSMZ). This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National Laboratory under contract No. DE-AC02-05CH11231, Lawrence Livermore

PY - 2010

Y1 - 2010

N2 - Intrasporangium calvum Kalakoutskii et al. 1967 is the type species of the genus Intrasporangium, which belongs to the actinobacterial family Intrasporangiaceae. The species is a Grampositive bacterium that forms a branching mycelium, which tends to break into irregular fragments. The mycelium of this strain may bear intercalary vesicles but does not contain spores. The strain described in this study is an airborne organism that was isolated from a school dining room in 1967. One particularly interesting feature of I. calvum is that the type of its menaquinone is different from all other representatives of the family Intrasporangiaceae. This is the first completed genome sequence from a member of the genus Intrasporangium and also the first sequence from the family Intrasporangiaceae. The 4,024,382 bp long genome with its 3,653 protein-coding and 57 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Intrasporangium calvum Kalakoutskii et al. 1967 is the type species of the genus Intrasporangium, which belongs to the actinobacterial family Intrasporangiaceae. The species is a Grampositive bacterium that forms a branching mycelium, which tends to break into irregular fragments. The mycelium of this strain may bear intercalary vesicles but does not contain spores. The strain described in this study is an airborne organism that was isolated from a school dining room in 1967. One particularly interesting feature of I. calvum is that the type of its menaquinone is different from all other representatives of the family Intrasporangiaceae. This is the first completed genome sequence from a member of the genus Intrasporangium and also the first sequence from the family Intrasporangiaceae. The 4,024,382 bp long genome with its 3,653 protein-coding and 57 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - Actinobacteria

KW - Airborne

KW - GEBA

KW - Gram-positive

KW - Intercalary vesicles

KW - Intrasporangiaceae

KW - Nocardioform

KW - Non-motile

UR - http://www.scopus.com/inward/record.url?scp=80053446845&partnerID=8YFLogxK

U2 - 10.4056/sigs.1263355

DO - 10.4056/sigs.1263355

M3 - Article

AN - SCOPUS:80053446845

VL - 3

SP - 294

EP - 303

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

SN - 1944-3277

IS - 3

ER -

ID: 88101788