Standard

Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1 T). / Sikorski, Johannes; Chertkov, Olga; Lapidus, Alla; Nolan, Matt; Lucas, Susan; del Rio, Tijana Glavina; Tice, Hope; Cheng, Jan Fang; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Mavromatis, Konstantinos; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Brambilla, Evelyne; Yasawong, Montri; Rohde, Manfred; Pukall, Rüdiger; Spring, Stefan; Göker, Markus; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter.

In: Standards in Genomic Sciences, Vol. 3, No. 3, 2010, p. 306-314.

Research output: Contribution to journal › Article › peer-review

Harvard

Sikorski, J, Chertkov, O, Lapidus, A, Nolan, M, Lucas, S, del Rio, TG, Tice, H, Cheng, JF, Tapia, R, Han, C, Goodwin, L, Pitluck, S, Liolios, K, Mavromatis, K, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Brambilla, E, Yasawong, M, Rohde, M, Pukall, R, Spring, S, Göker, M, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC & Klenk, HP 2010, 'Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1 T)', Standards in Genomic Sciences, vol. 3, no. 3, pp. 306-314. https://doi.org/10.4056/sigs.1273360

APA

Sikorski, J., Chertkov, O., Lapidus, A., Nolan, M., Lucas, S., del Rio, T. G., Tice, H., Cheng, J. F., Tapia, R., Han, C., Goodwin, L., Pitluck, S., Liolios, K., Mavromatis, K., Pati, A., Chen, A., Palaniappan, K., Land, M., Hauser, L., ... Klenk, H. P. (2010). Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1 T). Standards in Genomic Sciences, 3(3), 306-314. https://doi.org/10.4056/sigs.1273360

Vancouver

Sikorski J, Chertkov O, Lapidus A, Nolan M, Lucas S, del Rio TG et al. Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1 T). Standards in Genomic Sciences. 2010;3(3):306-314. https://doi.org/10.4056/sigs.1273360

Author

Sikorski, Johannes ; Chertkov, Olga ; Lapidus, Alla ; Nolan, Matt ; Lucas, Susan ; del Rio, Tijana Glavina ; Tice, Hope ; Cheng, Jan Fang ; Tapia, Roxane ; Han, Cliff ; Goodwin, Lynne ; Pitluck, Sam ; Liolios, Konstantinos ; Mavromatis, Konstantinos ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Brambilla, Evelyne ; Yasawong, Montri ; Rohde, Manfred ; Pukall, Rüdiger ; Spring, Stefan ; Göker, Markus ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A. ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter. / Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1 T). In: Standards in Genomic Sciences. 2010 ; Vol. 3, No. 3. pp. 306-314.

BibTeX

@article{161399c0cb644c1eaa084c93f8f61ac6,
title = "Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1 T)",
abstract = "Ilyobacter polytropus Stieb and Schink 1984 is the type species of the genus Ilyobacter, which belongs to the fusobacterial family Fusobacteriaceae. The species is of interest because its members are able to ferment quite a number of sugars and organic acids. I. polytropus has a broad versatility in using various fermentation pathways. Also, its members do not degrade poly-β-hydroxybutyrate but only the monomeric 3-hydroxybutyrate. This is the first completed genome sequence of a member of the genus Ilyobacter and the second sequence from the family Fusobacteriaceae. The 3,132,314 bp long genome with its 2,934 protein-coding and 108 RNA genes consists of two chromosomes (2 and 1 Mbp long) and one plasmid, and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.",
keywords = "3-hydroxybutyrate, Chemoorganotrophic, Fusobacteriaceae, GEBA, Gram-negative, Mesophilic, None-motile, Strictly anaerobic",
author = "Johannes Sikorski and Olga Chertkov and Alla Lapidus and Matt Nolan and Susan Lucas and {del Rio}, {Tijana Glavina} and Hope Tice and Cheng, {Jan Fang} and Roxane Tapia and Cliff Han and Lynne Goodwin and Sam Pitluck and Konstantinos Liolios and Konstantinos Mavromatis and Amrita Pati and Amy Chen and Krishna Palaniappan and Miriam Land and Loren Hauser and Chang, {Yun Juan} and Jeffries, {Cynthia D.} and Evelyne Brambilla and Montri Yasawong and Manfred Rohde and R{\"u}diger Pukall and Stefan Spring and Markus G{\"o}ker and Tanja Woyke and James Bristow and Eisen, {Jonathan A.} and Victor Markowitz and Philip Hugenholtz and Kyrpides, {Nikos C.} and Klenk, {Hans Peter}",
note = "Funding Information: We would like to gratefully acknowledge the help of Katja Steenblock (DSMZ) for growing I. polytropus cultures. This work was performed under the auspices of the US Department of Energy Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National Laboratory under contract No. DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Con-",
year = "2010",
doi = "10.4056/sigs.1273360",
language = "English",
volume = "3",
pages = "306--314",
journal = "Standards in Genomic Sciences",
issn = "1944-3277",
publisher = "Michigan State University",
number = "3",

}

RIS

TY - JOUR

T1 - Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1 T)

AU - Sikorski, Johannes

AU - Chertkov, Olga

AU - Lapidus, Alla

AU - Nolan, Matt

AU - Lucas, Susan

AU - del Rio, Tijana Glavina

AU - Tice, Hope

AU - Cheng, Jan Fang

AU - Tapia, Roxane

AU - Han, Cliff

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Liolios, Konstantinos

AU - Mavromatis, Konstantinos

AU - Pati, Amrita

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Land, Miriam

AU - Hauser, Loren

AU - Chang, Yun Juan

AU - Jeffries, Cynthia D.

AU - Brambilla, Evelyne

AU - Yasawong, Montri

AU - Rohde, Manfred

AU - Pukall, Rüdiger

AU - Spring, Stefan

AU - Göker, Markus

AU - Woyke, Tanja

AU - Bristow, James

AU - Eisen, Jonathan A.

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

N1 - Funding Information: We would like to gratefully acknowledge the help of Katja Steenblock (DSMZ) for growing I. polytropus cultures. This work was performed under the auspices of the US Department of Energy Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National Laboratory under contract No. DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Con-

PY - 2010

Y1 - 2010

N2 - Ilyobacter polytropus Stieb and Schink 1984 is the type species of the genus Ilyobacter, which belongs to the fusobacterial family Fusobacteriaceae. The species is of interest because its members are able to ferment quite a number of sugars and organic acids. I. polytropus has a broad versatility in using various fermentation pathways. Also, its members do not degrade poly-β-hydroxybutyrate but only the monomeric 3-hydroxybutyrate. This is the first completed genome sequence of a member of the genus Ilyobacter and the second sequence from the family Fusobacteriaceae. The 3,132,314 bp long genome with its 2,934 protein-coding and 108 RNA genes consists of two chromosomes (2 and 1 Mbp long) and one plasmid, and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Ilyobacter polytropus Stieb and Schink 1984 is the type species of the genus Ilyobacter, which belongs to the fusobacterial family Fusobacteriaceae. The species is of interest because its members are able to ferment quite a number of sugars and organic acids. I. polytropus has a broad versatility in using various fermentation pathways. Also, its members do not degrade poly-β-hydroxybutyrate but only the monomeric 3-hydroxybutyrate. This is the first completed genome sequence of a member of the genus Ilyobacter and the second sequence from the family Fusobacteriaceae. The 3,132,314 bp long genome with its 2,934 protein-coding and 108 RNA genes consists of two chromosomes (2 and 1 Mbp long) and one plasmid, and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - 3-hydroxybutyrate

KW - Chemoorganotrophic

KW - Fusobacteriaceae

KW - GEBA

KW - Gram-negative

KW - Mesophilic

KW - None-motile

KW - Strictly anaerobic

UR - http://www.scopus.com/inward/record.url?scp=80053437469&partnerID=8YFLogxK

U2 - 10.4056/sigs.1273360

DO - 10.4056/sigs.1273360

M3 - Article

AN - SCOPUS:80053437469

VL - 3

SP - 306

EP - 314

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

SN - 1944-3277

IS - 3

ER -

ID: 88102709