Standard
Complete genome sequence of ignisphaera aggregans type strain (AQ1.S1 T). / Göker, Markus; Held, Brittany; Lapidus, Alla; Nolan, Matt; Spring, Stefan; Yasawong, Montri; Lucas, Susan; del Rio, Tijana Glavina; Tice, Hope; Cheng, Jan Fang; Goodwin, Lynne; Tapia, Roxanne; Pitluck, Sam; Liolios, Konstantinos; Ivanova, Natalia; Mavromatis, Konstantinos; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Brambilla, Evelyne; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Brettin, Thomas; Detter, John C.; Han, Cliff; Rohde, Manfred; Sikorski, Johannes; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter.
In:
Standards in Genomic Sciences, Vol. 3, No. 1, 2010, p. 66-75.
Research output: Contribution to journal › Article › peer-review
Harvard
Göker, M, Held, B
, Lapidus, A, Nolan, M, Spring, S, Yasawong, M, Lucas, S, del Rio, TG, Tice, H, Cheng, JF, Goodwin, L, Tapia, R, Pitluck, S, Liolios, K, Ivanova, N, Mavromatis, K, Mikhailova, N, Pati, A, Chen, A, Palaniappan, K, Brambilla, E, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Brettin, T, Detter, JC, Han, C, Rohde, M, Sikorski, J, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC & Klenk, HP 2010, '
Complete genome sequence of ignisphaera aggregans type strain (AQ1.S1 T)',
Standards in Genomic Sciences, vol. 3, no. 1, pp. 66-75.
https://doi.org/10.4056/sigs.1072907APA
Göker, M., Held, B.
, Lapidus, A., Nolan, M., Spring, S., Yasawong, M., Lucas, S., del Rio, T. G., Tice, H., Cheng, J. F., Goodwin, L., Tapia, R., Pitluck, S., Liolios, K., Ivanova, N., Mavromatis, K., Mikhailova, N., Pati, A., Chen, A., ... Klenk, H. P. (2010).
Complete genome sequence of ignisphaera aggregans type strain (AQ1.S1 T).
Standards in Genomic Sciences,
3(1), 66-75.
https://doi.org/10.4056/sigs.1072907Vancouver
Author
Göker, Markus ; Held, Brittany
; Lapidus, Alla ; Nolan, Matt ; Spring, Stefan ; Yasawong, Montri ; Lucas, Susan ; del Rio, Tijana Glavina ; Tice, Hope ; Cheng, Jan Fang ; Goodwin, Lynne ; Tapia, Roxanne ; Pitluck, Sam ; Liolios, Konstantinos ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Mikhailova, Natalia ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Brambilla, Evelyne ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Brettin, Thomas ; Detter, John C. ; Han, Cliff ; Rohde, Manfred ; Sikorski, Johannes ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A. ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter. /
Complete genome sequence of ignisphaera aggregans type strain (AQ1.S1 T). In:
Standards in Genomic Sciences. 2010 ; Vol. 3, No. 1. pp. 66-75.
BibTeX
@article{d9b5ac98771e4fab8ca7324418516aa0,
title = "Complete genome sequence of ignisphaera aggregans type strain (AQ1.S1 T)",
abstract = "Ignisphaera aggregans Niederberger et al. 2006 is the type and sole species of genus Ignis-phaera. This archaeal species is characterized by a coccoid-shape and is strictly anaerobic, moderately acidophilic, heterotrophic hyperthermophilic and fermentative. The type strain AQ1.S1 T was isolated from a near neutral, boiling spring in Kuirau Park, Rotorua, New Zeal-and. This is the first completed genome sequence of the genus Ignisphaera and the fifth ge-nome (fourth type strain) sequence in the family Desulfurococcaceae. The 1,875,953 bp long genome with its 2,009 protein-coding and 52 RNA genes is a part of the Genomic Encyclo-pedia of Bacteria and Archaea project.",
keywords = "Cocci-shaped, Crenarchaeota, Desulfurococcaceae, Fermentative, GEBA, Hot spring, Hyperthermophile, Moderately acidophilic, Obligately anaerobic",
author = "Markus G{\"o}ker and Brittany Held and Alla Lapidus and Matt Nolan and Stefan Spring and Montri Yasawong and Susan Lucas and {del Rio}, {Tijana Glavina} and Hope Tice and Cheng, {Jan Fang} and Lynne Goodwin and Roxanne Tapia and Sam Pitluck and Konstantinos Liolios and Natalia Ivanova and Konstantinos Mavromatis and Natalia Mikhailova and Amrita Pati and Amy Chen and Krishna Palaniappan and Evelyne Brambilla and Miriam Land and Loren Hauser and Chang, {Yun Juan} and Jeffries, {Cynthia D.} and Thomas Brettin and Detter, {John C.} and Cliff Han and Manfred Rohde and Johannes Sikorski and Tanja Woyke and James Bristow and Eisen, {Jonathan A.} and Victor Markowitz and Philip Hugenholtz and Kyrpides, {Nikos C.} and Klenk, {Hans Peter}",
note = "Funding Information: We would like to gratefully acknowledge the help of Maren Schr{\"o}der (DSMZ) for growth of I. aggregans and the help of Alexander Auch (T{\"u}bingen, Germany) in creating a local version of the GBDP software. This work was performed under the auspices of the US Department of Energy Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National Laboratory under contract No. DE-AC02-05CH11231, Lawrence",
year = "2010",
doi = "10.4056/sigs.1072907",
language = "English",
volume = "3",
pages = "66--75",
journal = "Standards in Genomic Sciences",
issn = "1944-3277",
publisher = "Michigan State University",
number = "1",
}
RIS
TY - JOUR
T1 - Complete genome sequence of ignisphaera aggregans type strain (AQ1.S1 T)
AU - Göker, Markus
AU - Held, Brittany
AU - Lapidus, Alla
AU - Nolan, Matt
AU - Spring, Stefan
AU - Yasawong, Montri
AU - Lucas, Susan
AU - del Rio, Tijana Glavina
AU - Tice, Hope
AU - Cheng, Jan Fang
AU - Goodwin, Lynne
AU - Tapia, Roxanne
AU - Pitluck, Sam
AU - Liolios, Konstantinos
AU - Ivanova, Natalia
AU - Mavromatis, Konstantinos
AU - Mikhailova, Natalia
AU - Pati, Amrita
AU - Chen, Amy
AU - Palaniappan, Krishna
AU - Brambilla, Evelyne
AU - Land, Miriam
AU - Hauser, Loren
AU - Chang, Yun Juan
AU - Jeffries, Cynthia D.
AU - Brettin, Thomas
AU - Detter, John C.
AU - Han, Cliff
AU - Rohde, Manfred
AU - Sikorski, Johannes
AU - Woyke, Tanja
AU - Bristow, James
AU - Eisen, Jonathan A.
AU - Markowitz, Victor
AU - Hugenholtz, Philip
AU - Kyrpides, Nikos C.
AU - Klenk, Hans Peter
N1 - Funding Information:
We would like to gratefully acknowledge the help of Maren Schröder (DSMZ) for growth of I. aggregans and the help of Alexander Auch (Tübingen, Germany) in creating a local version of the GBDP software. This work was performed under the auspices of the US Department of Energy Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National Laboratory under contract No. DE-AC02-05CH11231, Lawrence
PY - 2010
Y1 - 2010
N2 - Ignisphaera aggregans Niederberger et al. 2006 is the type and sole species of genus Ignis-phaera. This archaeal species is characterized by a coccoid-shape and is strictly anaerobic, moderately acidophilic, heterotrophic hyperthermophilic and fermentative. The type strain AQ1.S1 T was isolated from a near neutral, boiling spring in Kuirau Park, Rotorua, New Zeal-and. This is the first completed genome sequence of the genus Ignisphaera and the fifth ge-nome (fourth type strain) sequence in the family Desulfurococcaceae. The 1,875,953 bp long genome with its 2,009 protein-coding and 52 RNA genes is a part of the Genomic Encyclo-pedia of Bacteria and Archaea project.
AB - Ignisphaera aggregans Niederberger et al. 2006 is the type and sole species of genus Ignis-phaera. This archaeal species is characterized by a coccoid-shape and is strictly anaerobic, moderately acidophilic, heterotrophic hyperthermophilic and fermentative. The type strain AQ1.S1 T was isolated from a near neutral, boiling spring in Kuirau Park, Rotorua, New Zeal-and. This is the first completed genome sequence of the genus Ignisphaera and the fifth ge-nome (fourth type strain) sequence in the family Desulfurococcaceae. The 1,875,953 bp long genome with its 2,009 protein-coding and 52 RNA genes is a part of the Genomic Encyclo-pedia of Bacteria and Archaea project.
KW - Cocci-shaped
KW - Crenarchaeota
KW - Desulfurococcaceae
KW - Fermentative
KW - GEBA
KW - Hot spring
KW - Hyperthermophile
KW - Moderately acidophilic
KW - Obligately anaerobic
UR - http://www.scopus.com/inward/record.url?scp=80053348831&partnerID=8YFLogxK
U2 - 10.4056/sigs.1072907
DO - 10.4056/sigs.1072907
M3 - Article
AN - SCOPUS:80053348831
VL - 3
SP - 66
EP - 75
JO - Standards in Genomic Sciences
JF - Standards in Genomic Sciences
SN - 1944-3277
IS - 1
ER -
