Standard

Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6 T). / Zeytun, Ahmet; Sikorski, Johannes; Nolan, Matt; Lapidus, Alla; Lucas, Susan; Han, James; Tice, Hope; Cheng, Jan Fang; Tapia, Roxanne; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Mavromatis, Konstantinos; Ovchinnikova, Galina; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Ngatchou-Djao, Olivier D.; Land, Miriam; Hauser, Loren; Jeffries, Cynthia D.; Han, Cliff; Detter, John C.; Übler, Susanne; Rohde, Manfred; Tindall, Brian J.; Göker, Markus; Wirth, Reinhard; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Klenk, Hans Peter; Kyrpides, Nikos C.

In: Standards in Genomic Sciences, Vol. 4, No. 2, 11.10.2011, p. 131-143.

Research output: Contribution to journal › Article › peer-review

Harvard

Zeytun, A, Sikorski, J, Nolan, M, Lapidus, A, Lucas, S, Han, J, Tice, H, Cheng, JF, Tapia, R, Goodwin, L, Pitluck, S, Liolios, K, Mavromatis, K, Ovchinnikova, G, Pati, A, Chen, A, Palaniappan, K, Ngatchou-Djao, OD, Land, M, Hauser, L, Jeffries, CD, Han, C, Detter, JC, Übler, S, Rohde, M, Tindall, BJ, Göker, M, Wirth, R, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Klenk, HP & Kyrpides, NC 2011, 'Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6 T)', Standards in Genomic Sciences, vol. 4, no. 2, pp. 131-143. https://doi.org/10.4056/sigs.1463589

APA

Zeytun, A., Sikorski, J., Nolan, M., Lapidus, A., Lucas, S., Han, J., Tice, H., Cheng, J. F., Tapia, R., Goodwin, L., Pitluck, S., Liolios, K., Mavromatis, K., Ovchinnikova, G., Pati, A., Chen, A., Palaniappan, K., Ngatchou-Djao, O. D., Land, M., ... Kyrpides, N. C. (2011). Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6 T). Standards in Genomic Sciences, 4(2), 131-143. https://doi.org/10.4056/sigs.1463589

Vancouver

Zeytun A, Sikorski J, Nolan M, Lapidus A, Lucas S, Han J et al. Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6 T). Standards in Genomic Sciences. 2011 Oct 11;4(2):131-143. https://doi.org/10.4056/sigs.1463589

Author

Zeytun, Ahmet ; Sikorski, Johannes ; Nolan, Matt ; Lapidus, Alla ; Lucas, Susan ; Han, James ; Tice, Hope ; Cheng, Jan Fang ; Tapia, Roxanne ; Goodwin, Lynne ; Pitluck, Sam ; Liolios, Konstantinos ; Mavromatis, Konstantinos ; Ovchinnikova, Galina ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Ngatchou-Djao, Olivier D. ; Land, Miriam ; Hauser, Loren ; Jeffries, Cynthia D. ; Han, Cliff ; Detter, John C. ; Übler, Susanne ; Rohde, Manfred ; Tindall, Brian J. ; Göker, Markus ; Wirth, Reinhard ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A. ; Markowitz, Victor ; Hugenholtz, Philip ; Klenk, Hans Peter ; Kyrpides, Nikos C. / Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6 T). In: Standards in Genomic Sciences. 2011 ; Vol. 4, No. 2. pp. 131-143.

BibTeX

@article{9517724c92ba4374af5cc60fab6a9e3d,
title = "Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6 T)",
abstract = "Hydrogenobacter thermophilus Kawasumi et al. 1984 is the type species of the genus Hydro-genobacter. H. thermophilus was the first obligate autotrophic organism reported among aerobic hydrogen-oxidizing bacteria. Strain TK-6 T is of interest because of the unusually effi-cient hydrogen-oxidizing ability of this strain, which results in a faster generation time com-pared to other autotrophs. It is also able to grow anaerobically using nitrate as an electron acceptor when molecular hydrogen is used as the energy source, and able to aerobically fix CO 2 via the reductive tricarboxylic acid cycle. This is the fifth completed genome sequence in the family Aquificaceae, and the second genome sequence determined from a strain de-rived from the original isolate. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 1,742,932 bp long genome with its 1,899 protein-coding and 49 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.",
keywords = "Aerobic, Aquificaceae, Aquificae, GEBA, Gram-negative, Hydrogen-oxidizing, Non sporeforming, Nonmotile, Obligately chemolithoautotrophic, Rod shaped, Strictly thermophilic",
author = "Ahmet Zeytun and Johannes Sikorski and Matt Nolan and Alla Lapidus and Susan Lucas and James Han and Hope Tice and Cheng, {Jan Fang} and Roxanne Tapia and Lynne Goodwin and Sam Pitluck and Konstantinos Liolios and Konstantinos Mavromatis and Galina Ovchinnikova and Amrita Pati and Amy Chen and Krishna Palaniappan and Ngatchou-Djao, {Olivier D.} and Miriam Land and Loren Hauser and Jeffries, {Cynthia D.} and Cliff Han and Detter, {John C.} and Susanne {\"U}bler and Manfred Rohde and Tindall, {Brian J.} and Markus G{\"o}ker and Reinhard Wirth and Tanja Woyke and James Bristow and Eisen, {Jonathan A.} and Victor Markowitz and Philip Hugenholtz and Klenk, {Hans Peter} and Kyrpides, {Nikos C.}",
year = "2011",
month = oct,
day = "11",
doi = "10.4056/sigs.1463589",
language = "English",
volume = "4",
pages = "131--143",
journal = "Standards in Genomic Sciences",
issn = "1944-3277",
publisher = "Michigan State University",
number = "2",

}

RIS

TY - JOUR

T1 - Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6 T)

AU - Zeytun, Ahmet

AU - Sikorski, Johannes

AU - Nolan, Matt

AU - Lapidus, Alla

AU - Lucas, Susan

AU - Han, James

AU - Tice, Hope

AU - Cheng, Jan Fang

AU - Tapia, Roxanne

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Liolios, Konstantinos

AU - Mavromatis, Konstantinos

AU - Ovchinnikova, Galina

AU - Pati, Amrita

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Ngatchou-Djao, Olivier D.

AU - Land, Miriam

AU - Hauser, Loren

AU - Jeffries, Cynthia D.

AU - Han, Cliff

AU - Detter, John C.

AU - Übler, Susanne

AU - Rohde, Manfred

AU - Tindall, Brian J.

AU - Göker, Markus

AU - Wirth, Reinhard

AU - Woyke, Tanja

AU - Bristow, James

AU - Eisen, Jonathan A.

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Klenk, Hans Peter

AU - Kyrpides, Nikos C.

PY - 2011/10/11

Y1 - 2011/10/11

N2 - Hydrogenobacter thermophilus Kawasumi et al. 1984 is the type species of the genus Hydro-genobacter. H. thermophilus was the first obligate autotrophic organism reported among aerobic hydrogen-oxidizing bacteria. Strain TK-6 T is of interest because of the unusually effi-cient hydrogen-oxidizing ability of this strain, which results in a faster generation time com-pared to other autotrophs. It is also able to grow anaerobically using nitrate as an electron acceptor when molecular hydrogen is used as the energy source, and able to aerobically fix CO 2 via the reductive tricarboxylic acid cycle. This is the fifth completed genome sequence in the family Aquificaceae, and the second genome sequence determined from a strain de-rived from the original isolate. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 1,742,932 bp long genome with its 1,899 protein-coding and 49 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Hydrogenobacter thermophilus Kawasumi et al. 1984 is the type species of the genus Hydro-genobacter. H. thermophilus was the first obligate autotrophic organism reported among aerobic hydrogen-oxidizing bacteria. Strain TK-6 T is of interest because of the unusually effi-cient hydrogen-oxidizing ability of this strain, which results in a faster generation time com-pared to other autotrophs. It is also able to grow anaerobically using nitrate as an electron acceptor when molecular hydrogen is used as the energy source, and able to aerobically fix CO 2 via the reductive tricarboxylic acid cycle. This is the fifth completed genome sequence in the family Aquificaceae, and the second genome sequence determined from a strain de-rived from the original isolate. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 1,742,932 bp long genome with its 1,899 protein-coding and 49 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - Aerobic

KW - Aquificaceae

KW - Aquificae

KW - GEBA

KW - Gram-negative

KW - Hydrogen-oxidizing

KW - Non sporeforming

KW - Nonmotile

KW - Obligately chemolithoautotrophic

KW - Rod shaped

KW - Strictly thermophilic

UR - http://www.scopus.com/inward/record.url?scp=80053488702&partnerID=8YFLogxK

U2 - 10.4056/sigs.1463589

DO - 10.4056/sigs.1463589

M3 - Article

AN - SCOPUS:80053488702

VL - 4

SP - 131

EP - 143

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

SN - 1944-3277

IS - 2

ER -

ID: 53058356