Standard

Complete genome sequence of Haloterrigena turkmenica type strain (4k T). / Saunders, Elisabeth; Tindall, Brian J.; Fähnrich, Regine; Lapidus, Alla; Copeland, Alex; del Rio, Tijana Glavina; Lucas, Susan; Chen, Feng; Tice, Hope; Cheng, Jan Fang; Han, Cliff; Detter, John C.; Bruce, David; Goodwin, Lynne; Chain, Patrick; Pitluck, Sam; Pati, Amrita; Mavromatis, Konstantinos; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Brettin, Thomas; Rohde, Manfred; Göker, Markus; Bristow, James; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Klenk, Hans Peter; Kyrpides, Nikos C.

In: Standards in Genomic Sciences, Vol. 2, No. 1, 2010, p. 107-116.

Research output: Contribution to journal › Article › peer-review

Harvard

Saunders, E, Tindall, BJ, Fähnrich, R, Lapidus, A, Copeland, A, del Rio, TG, Lucas, S, Chen, F, Tice, H, Cheng, JF, Han, C, Detter, JC, Bruce, D, Goodwin, L, Chain, P, Pitluck, S, Pati, A, Mavromatis, K, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Brettin, T, Rohde, M, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Klenk, HP & Kyrpides, NC 2010, 'Complete genome sequence of Haloterrigena turkmenica type strain (4k T)', Standards in Genomic Sciences, vol. 2, no. 1, pp. 107-116. https://doi.org/10.4056/sigs.681272

APA

Saunders, E., Tindall, B. J., Fähnrich, R., Lapidus, A., Copeland, A., del Rio, T. G., Lucas, S., Chen, F., Tice, H., Cheng, J. F., Han, C., Detter, J. C., Bruce, D., Goodwin, L., Chain, P., Pitluck, S., Pati, A., Mavromatis, K., Chen, A., ... Kyrpides, N. C. (2010). Complete genome sequence of Haloterrigena turkmenica type strain (4k T). Standards in Genomic Sciences, 2(1), 107-116. https://doi.org/10.4056/sigs.681272

Vancouver

Saunders E, Tindall BJ, Fähnrich R, Lapidus A, Copeland A, del Rio TG et al. Complete genome sequence of Haloterrigena turkmenica type strain (4k T). Standards in Genomic Sciences. 2010;2(1):107-116. https://doi.org/10.4056/sigs.681272

Author

Saunders, Elisabeth ; Tindall, Brian J. ; Fähnrich, Regine ; Lapidus, Alla ; Copeland, Alex ; del Rio, Tijana Glavina ; Lucas, Susan ; Chen, Feng ; Tice, Hope ; Cheng, Jan Fang ; Han, Cliff ; Detter, John C. ; Bruce, David ; Goodwin, Lynne ; Chain, Patrick ; Pitluck, Sam ; Pati, Amrita ; Mavromatis, Konstantinos ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Brettin, Thomas ; Rohde, Manfred ; Göker, Markus ; Bristow, James ; Eisen, Jonathan A. ; Markowitz, Victor ; Hugenholtz, Philip ; Klenk, Hans Peter ; Kyrpides, Nikos C. / Complete genome sequence of Haloterrigena turkmenica type strain (4k T). In: Standards in Genomic Sciences. 2010 ; Vol. 2, No. 1. pp. 107-116.

BibTeX

@article{858a550494c04c35836e9393a6d7dca2,
title = "Complete genome sequence of Haloterrigena turkmenica type strain (4k T)",
abstract = "Haloterrigena turkmenica (Zvyagintseva and Tarasov 1987) Ventosa et al. 1999, comb. nov. is the type species of the genus Haloterrigena in the euryarchaeal family Halobacteriaceae. It is of phylogenetic interest because of the yet unclear position of the genera Haloterrigena and Natrinema within the Halobacteriaceae, which created some taxonomic problems historically. H. turkmenica, was isolated from sulfate saline soil in Turkmenistan, is a relatively fast growing, chemoorganotrophic, carotenoid-containing, extreme halophile, requiring at least 2 M NaCl for growth. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the genus Haloterrigena, but the eighth genome sequence from a member of the family Halobacteriaceae. The 5,440,782 bp genome (including six plasmids) with its 5,287 protein-coding and 63 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.",
keywords = "Aerobic, Carotenoidscontaining, Extreme halophile, Free-living, GEBA, Halobacteriaceae, Non-pathogenic, Thermophile",
author = "Elisabeth Saunders and Tindall, {Brian J.} and Regine F{\"a}hnrich and Alla Lapidus and Alex Copeland and {del Rio}, {Tijana Glavina} and Susan Lucas and Feng Chen and Hope Tice and Cheng, {Jan Fang} and Cliff Han and Detter, {John C.} and David Bruce and Lynne Goodwin and Patrick Chain and Sam Pitluck and Amrita Pati and Konstantinos Mavromatis and Amy Chen and Krishna Palaniappan and Miriam Land and Loren Hauser and Chang, {Yun Juan} and Jeffries, {Cynthia D.} and Thomas Brettin and Manfred Rohde and Markus G{\"o}ker and James Bristow and Eisen, {Jonathan A.} and Victor Markowitz and Philip Hugenholtz and Klenk, {Hans Peter} and Kyrpides, {Nikos C.}",
note = "Funding Information: We would like to gratefully acknowledge the help of Susanne Schneider (DSMZ) for DNA extraction and quality analysis. This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley",
year = "2010",
doi = "10.4056/sigs.681272",
language = "English",
volume = "2",
pages = "107--116",
journal = "Standards in Genomic Sciences",
issn = "1944-3277",
publisher = "Michigan State University",
number = "1",

}

RIS

TY - JOUR

T1 - Complete genome sequence of Haloterrigena turkmenica type strain (4k T)

AU - Saunders, Elisabeth

AU - Tindall, Brian J.

AU - Fähnrich, Regine

AU - Lapidus, Alla

AU - Copeland, Alex

AU - del Rio, Tijana Glavina

AU - Lucas, Susan

AU - Chen, Feng

AU - Tice, Hope

AU - Cheng, Jan Fang

AU - Han, Cliff

AU - Detter, John C.

AU - Bruce, David

AU - Goodwin, Lynne

AU - Chain, Patrick

AU - Pitluck, Sam

AU - Pati, Amrita

AU - Mavromatis, Konstantinos

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Land, Miriam

AU - Hauser, Loren

AU - Chang, Yun Juan

AU - Jeffries, Cynthia D.

AU - Brettin, Thomas

AU - Rohde, Manfred

AU - Göker, Markus

AU - Bristow, James

AU - Eisen, Jonathan A.

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Klenk, Hans Peter

AU - Kyrpides, Nikos C.

N1 - Funding Information: We would like to gratefully acknowledge the help of Susanne Schneider (DSMZ) for DNA extraction and quality analysis. This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley

PY - 2010

Y1 - 2010

N2 - Haloterrigena turkmenica (Zvyagintseva and Tarasov 1987) Ventosa et al. 1999, comb. nov. is the type species of the genus Haloterrigena in the euryarchaeal family Halobacteriaceae. It is of phylogenetic interest because of the yet unclear position of the genera Haloterrigena and Natrinema within the Halobacteriaceae, which created some taxonomic problems historically. H. turkmenica, was isolated from sulfate saline soil in Turkmenistan, is a relatively fast growing, chemoorganotrophic, carotenoid-containing, extreme halophile, requiring at least 2 M NaCl for growth. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the genus Haloterrigena, but the eighth genome sequence from a member of the family Halobacteriaceae. The 5,440,782 bp genome (including six plasmids) with its 5,287 protein-coding and 63 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Haloterrigena turkmenica (Zvyagintseva and Tarasov 1987) Ventosa et al. 1999, comb. nov. is the type species of the genus Haloterrigena in the euryarchaeal family Halobacteriaceae. It is of phylogenetic interest because of the yet unclear position of the genera Haloterrigena and Natrinema within the Halobacteriaceae, which created some taxonomic problems historically. H. turkmenica, was isolated from sulfate saline soil in Turkmenistan, is a relatively fast growing, chemoorganotrophic, carotenoid-containing, extreme halophile, requiring at least 2 M NaCl for growth. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the genus Haloterrigena, but the eighth genome sequence from a member of the family Halobacteriaceae. The 5,440,782 bp genome (including six plasmids) with its 5,287 protein-coding and 63 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - Aerobic

KW - Carotenoidscontaining

KW - Extreme halophile

KW - Free-living

KW - GEBA

KW - Halobacteriaceae

KW - Non-pathogenic

KW - Thermophile

UR - http://www.scopus.com/inward/record.url?scp=78149419515&partnerID=8YFLogxK

U2 - 10.4056/sigs.681272

DO - 10.4056/sigs.681272

M3 - Article

AN - SCOPUS:78149419515

VL - 2

SP - 107

EP - 116

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

SN - 1944-3277

IS - 1

ER -

ID: 90136925