Standard

Complete genome sequence of Halogeometricum borinquense type strain (PR 3). / Malfatti, Stephanie; Tindall, Brian J.; Schneider, Susanne; Fähnrich, Regine; Lapidus, Alla; Labuttii, Kurt; Copeland, Alex; Glavina Del Rio, Tijana; Nolan, Matt; Chen, Feng; Lucas, Susan; Tice, Hope; Cheng, Jan Fang; Bruce, David; Goodwin, Lynne; Pitluck, Sam; Anderson, Iain; Pati, Amrita; Mavromatis, Konstantinos; Chen, Amy; Palaniappan, Krishna; D'haeseleer, Patrik; Göker, Markus; Bristow, Jim; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter; Chain, Patrick.

In: Standards in Genomic Sciences, Vol. 1, No. 2, 2009, p. 150-158.

Research output: Contribution to journal › Article › peer-review

Harvard

Malfatti, S, Tindall, BJ, Schneider, S, Fähnrich, R, Lapidus, A, Labuttii, K, Copeland, A, Glavina Del Rio, T, Nolan, M, Chen, F, Lucas, S, Tice, H, Cheng, JF, Bruce, D, Goodwin, L, Pitluck, S, Anderson, I, Pati, A, Mavromatis, K, Chen, A, Palaniappan, K, D'haeseleer, P, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP & Chain, P 2009, 'Complete genome sequence of Halogeometricum borinquense type strain (PR 3)', Standards in Genomic Sciences, vol. 1, no. 2, pp. 150-158. https://doi.org/10.4056/23264

APA

Malfatti, S., Tindall, B. J., Schneider, S., Fähnrich, R., Lapidus, A., Labuttii, K., Copeland, A., Glavina Del Rio, T., Nolan, M., Chen, F., Lucas, S., Tice, H., Cheng, J. F., Bruce, D., Goodwin, L., Pitluck, S., Anderson, I., Pati, A., Mavromatis, K., ... Chain, P. (2009). Complete genome sequence of Halogeometricum borinquense type strain (PR 3). Standards in Genomic Sciences, 1(2), 150-158. https://doi.org/10.4056/23264

Vancouver

Malfatti S, Tindall BJ, Schneider S, Fähnrich R, Lapidus A, Labuttii K et al. Complete genome sequence of Halogeometricum borinquense type strain (PR 3). Standards in Genomic Sciences. 2009;1(2):150-158. https://doi.org/10.4056/23264

Author

Malfatti, Stephanie ; Tindall, Brian J. ; Schneider, Susanne ; Fähnrich, Regine ; Lapidus, Alla ; Labuttii, Kurt ; Copeland, Alex ; Glavina Del Rio, Tijana ; Nolan, Matt ; Chen, Feng ; Lucas, Susan ; Tice, Hope ; Cheng, Jan Fang ; Bruce, David ; Goodwin, Lynne ; Pitluck, Sam ; Anderson, Iain ; Pati, Amrita ; Mavromatis, Konstantinos ; Chen, Amy ; Palaniappan, Krishna ; D'haeseleer, Patrik ; Göker, Markus ; Bristow, Jim ; Eisen, Jonathan A. ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter ; Chain, Patrick. / Complete genome sequence of Halogeometricum borinquense type strain (PR 3). In: Standards in Genomic Sciences. 2009 ; Vol. 1, No. 2. pp. 150-158.

BibTeX

@article{04c3676478884065a88e3e7507074948,
title = "Complete genome sequence of Halogeometricum borinquense type strain (PR 3)",
abstract = "Halogeometricum borinquense Montalvo-Rodr{\'i}guez et al. 1998 is the type species of the genus, and is of phylogenetic interest because of its distinct location between the halobacterial genera Haloquadratum and Halosarcina. H. borinquense requires extremely high salt (NaCl) concentrations for growth. It can not only grow aerobically but also anaerobically using nitrate as electron acceptor. The strain described in this report is a free-living, motile, pleomorphic, euryarchaeon, which was originally isolated from the solar salterns of Cabo Rojo, Puer-to Rico. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the halobacterial genus Halogeometricum, and this 3,944,467 bp long six replicon genome with its 3937 protein-coding and 57 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.",
keywords = "Aerobic, Euryarchaeon, Free-living, Halophile, Non-pathogenic, Pleomorphic cells",
author = "Stephanie Malfatti and Tindall, {Brian J.} and Susanne Schneider and Regine F{\"a}hnrich and Alla Lapidus and Kurt Labuttii and Alex Copeland and {Glavina Del Rio}, Tijana and Matt Nolan and Feng Chen and Susan Lucas and Hope Tice and Cheng, {Jan Fang} and David Bruce and Lynne Goodwin and Sam Pitluck and Iain Anderson and Amrita Pati and Konstantinos Mavromatis and Amy Chen and Krishna Palaniappan and Patrik D'haeseleer and Markus G{\"o}ker and Jim Bristow and Eisen, {Jonathan A.} and Victor Markowitz and Philip Hugenholtz and Kyrpides, {Nikos C.} and Klenk, {Hans Peter} and Patrick Chain",
year = "2009",
doi = "10.4056/23264",
language = "English",
volume = "1",
pages = "150--158",
journal = "Standards in Genomic Sciences",
issn = "1944-3277",
publisher = "Michigan State University",
number = "2",

}

RIS

TY - JOUR

T1 - Complete genome sequence of Halogeometricum borinquense type strain (PR 3)

AU - Malfatti, Stephanie

AU - Tindall, Brian J.

AU - Schneider, Susanne

AU - Fähnrich, Regine

AU - Lapidus, Alla

AU - Labuttii, Kurt

AU - Copeland, Alex

AU - Glavina Del Rio, Tijana

AU - Nolan, Matt

AU - Chen, Feng

AU - Lucas, Susan

AU - Tice, Hope

AU - Cheng, Jan Fang

AU - Bruce, David

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Anderson, Iain

AU - Pati, Amrita

AU - Mavromatis, Konstantinos

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - D'haeseleer, Patrik

AU - Göker, Markus

AU - Bristow, Jim

AU - Eisen, Jonathan A.

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

AU - Chain, Patrick

PY - 2009

Y1 - 2009

N2 - Halogeometricum borinquense Montalvo-Rodríguez et al. 1998 is the type species of the genus, and is of phylogenetic interest because of its distinct location between the halobacterial genera Haloquadratum and Halosarcina. H. borinquense requires extremely high salt (NaCl) concentrations for growth. It can not only grow aerobically but also anaerobically using nitrate as electron acceptor. The strain described in this report is a free-living, motile, pleomorphic, euryarchaeon, which was originally isolated from the solar salterns of Cabo Rojo, Puer-to Rico. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the halobacterial genus Halogeometricum, and this 3,944,467 bp long six replicon genome with its 3937 protein-coding and 57 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Halogeometricum borinquense Montalvo-Rodríguez et al. 1998 is the type species of the genus, and is of phylogenetic interest because of its distinct location between the halobacterial genera Haloquadratum and Halosarcina. H. borinquense requires extremely high salt (NaCl) concentrations for growth. It can not only grow aerobically but also anaerobically using nitrate as electron acceptor. The strain described in this report is a free-living, motile, pleomorphic, euryarchaeon, which was originally isolated from the solar salterns of Cabo Rojo, Puer-to Rico. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the halobacterial genus Halogeometricum, and this 3,944,467 bp long six replicon genome with its 3937 protein-coding and 57 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - Aerobic

KW - Euryarchaeon

KW - Free-living

KW - Halophile

KW - Non-pathogenic

KW - Pleomorphic cells

UR - http://www.scopus.com/inward/record.url?scp=78149420666&partnerID=8YFLogxK

U2 - 10.4056/23264

DO - 10.4056/23264

M3 - Article

AN - SCOPUS:78149420666

VL - 1

SP - 150

EP - 158

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

SN - 1944-3277

IS - 2

ER -

ID: 90134447