Standard

Complete genome sequence of Desulfomicrobium baculatum type strain (X T). / Copeland, Alex; Spring, Stefan; Göker, Markus; Schneider, Susanne; Lapidus, Alla; del Rio, Tijana Glavina; Tice, Hope; Cheng, Jan Fang; Lucas, Susan; Chen, Feng; Nolan, Matt; Bruce, David; Goodwin, Lynne; Pitluck, Sam; Mavromatis, Konstantinos; Ovchinnikova, Galina; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia C.; Meincke, Linda; Sims, David; Brettin, Thomas; Detter, John C.; Han, Cliff; Chain, Patrick; Bristow, Jim; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter; Lucas, Susan.

In: Standards in Genomic Sciences, Vol. 1, No. 1, 2009, p. 29-37.

Research output: Contribution to journal › Article › peer-review

Harvard

Copeland, A, Spring, S, Göker, M, Schneider, S, Lapidus, A, del Rio, TG, Tice, H, Cheng, JF, Lucas, S, Chen, F, Nolan, M, Bruce, D, Goodwin, L, Pitluck, S, Mavromatis, K, Ovchinnikova, G, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CC, Meincke, L, Sims, D, Brettin, T, Detter, JC, Han, C, Chain, P, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP & Lucas, S 2009, 'Complete genome sequence of Desulfomicrobium baculatum type strain (X T)', Standards in Genomic Sciences, vol. 1, no. 1, pp. 29-37. https://doi.org/10.4056/sigs.13134

APA

Copeland, A., Spring, S., Göker, M., Schneider, S., Lapidus, A., del Rio, T. G., Tice, H., Cheng, J. F., Lucas, S., Chen, F., Nolan, M., Bruce, D., Goodwin, L., Pitluck, S., Mavromatis, K., Ovchinnikova, G., Pati, A., Chen, A., Palaniappan, K., ... Lucas, S. (2009). Complete genome sequence of Desulfomicrobium baculatum type strain (X T). Standards in Genomic Sciences, 1(1), 29-37. https://doi.org/10.4056/sigs.13134

Vancouver

Copeland A, Spring S, Göker M, Schneider S, Lapidus A, del Rio TG et al. Complete genome sequence of Desulfomicrobium baculatum type strain (X T). Standards in Genomic Sciences. 2009;1(1):29-37. https://doi.org/10.4056/sigs.13134

Author

Copeland, Alex ; Spring, Stefan ; Göker, Markus ; Schneider, Susanne ; Lapidus, Alla ; del Rio, Tijana Glavina ; Tice, Hope ; Cheng, Jan Fang ; Lucas, Susan ; Chen, Feng ; Nolan, Matt ; Bruce, David ; Goodwin, Lynne ; Pitluck, Sam ; Mavromatis, Konstantinos ; Ovchinnikova, Galina ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia C. ; Meincke, Linda ; Sims, David ; Brettin, Thomas ; Detter, John C. ; Han, Cliff ; Chain, Patrick ; Bristow, Jim ; Eisen, Jonathan A. ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter ; Lucas, Susan. / Complete genome sequence of Desulfomicrobium baculatum type strain (X T). In: Standards in Genomic Sciences. 2009 ; Vol. 1, No. 1. pp. 29-37.

BibTeX

@article{6b064825cdc544c5a7b87c59aa78b582,
title = "Complete genome sequence of Desulfomicrobium baculatum type strain (X T)",
abstract = "Desulfomicrobium baculatum is the type species of the genus Desulfomicrobium, which is the type genus of the family Desulfomicrobiaceae. It is of phylogenetic interest because of the isolated location of the family Desulfomicrobiaceae within the order Desulfovibrionales. D. baculatum strain X T is a Gram-negative, motile, sulfate-reducing bacterium isolated from water-saturated manganese carbonate ore. It is strictly anaerobic and does not require NaCl for growth, although NaCl concentrations up to 6% (w/v) are tolerated. The metabolism is respiratory or fermentative. In the presence of sulfate, pyruvate and lactate are incompletely oxidized to acetate and CO 2. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence of a member of the deltaproteobacterial family Desulfomicrobiaceae, and this 3,942,657 bp long single replicon genome with its 3494 protein-coding and 72 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.",
keywords = "Anaerobe, Desulfomicrobiaceae, Free-living, Freshwater, Gram-negative, Mesophile, Non-pathogenic, Sulfate reducer",
author = "Alex Copeland and Stefan Spring and Markus G{\"o}ker and Susanne Schneider and Alla Lapidus and {del Rio}, {Tijana Glavina} and Hope Tice and Cheng, {Jan Fang} and Susan Lucas and Feng Chen and Matt Nolan and David Bruce and Lynne Goodwin and Sam Pitluck and Konstantinos Mavromatis and Galina Ovchinnikova and Amrita Pati and Amy Chen and Krishna Palaniappan and Miriam Land and Loren Hauser and Chang, {Yun Juan} and Jeffries, {Cynthia C.} and Linda Meincke and David Sims and Thomas Brettin and Detter, {John C.} and Cliff Han and Patrick Chain and Jim Bristow and Eisen, {Jonathan A.} and Victor Markowitz and Philip Hugenholtz and Kyrpides, {Nikos C.} and Klenk, {Hans Peter} and Susan Lucas",
note = "Funding Information: We would like to gratefully acknowledge the help of Maren Schroeder (DSMZ) for growing D. baculatum cultures. This work was performed under the auspices of the US Department of Energy Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley",
year = "2009",
doi = "10.4056/sigs.13134",
language = "English",
volume = "1",
pages = "29--37",
journal = "Standards in Genomic Sciences",
issn = "1944-3277",
publisher = "Michigan State University",
number = "1",

}

RIS

TY - JOUR

T1 - Complete genome sequence of Desulfomicrobium baculatum type strain (X T)

AU - Copeland, Alex

AU - Spring, Stefan

AU - Göker, Markus

AU - Schneider, Susanne

AU - Lapidus, Alla

AU - del Rio, Tijana Glavina

AU - Tice, Hope

AU - Cheng, Jan Fang

AU - Lucas, Susan

AU - Chen, Feng

AU - Nolan, Matt

AU - Bruce, David

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Mavromatis, Konstantinos

AU - Ovchinnikova, Galina

AU - Pati, Amrita

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Land, Miriam

AU - Hauser, Loren

AU - Chang, Yun Juan

AU - Jeffries, Cynthia C.

AU - Meincke, Linda

AU - Sims, David

AU - Brettin, Thomas

AU - Detter, John C.

AU - Han, Cliff

AU - Chain, Patrick

AU - Bristow, Jim

AU - Eisen, Jonathan A.

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

AU - Lucas, Susan

N1 - Funding Information: We would like to gratefully acknowledge the help of Maren Schroeder (DSMZ) for growing D. baculatum cultures. This work was performed under the auspices of the US Department of Energy Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley

PY - 2009

Y1 - 2009

N2 - Desulfomicrobium baculatum is the type species of the genus Desulfomicrobium, which is the type genus of the family Desulfomicrobiaceae. It is of phylogenetic interest because of the isolated location of the family Desulfomicrobiaceae within the order Desulfovibrionales. D. baculatum strain X T is a Gram-negative, motile, sulfate-reducing bacterium isolated from water-saturated manganese carbonate ore. It is strictly anaerobic and does not require NaCl for growth, although NaCl concentrations up to 6% (w/v) are tolerated. The metabolism is respiratory or fermentative. In the presence of sulfate, pyruvate and lactate are incompletely oxidized to acetate and CO 2. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence of a member of the deltaproteobacterial family Desulfomicrobiaceae, and this 3,942,657 bp long single replicon genome with its 3494 protein-coding and 72 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Desulfomicrobium baculatum is the type species of the genus Desulfomicrobium, which is the type genus of the family Desulfomicrobiaceae. It is of phylogenetic interest because of the isolated location of the family Desulfomicrobiaceae within the order Desulfovibrionales. D. baculatum strain X T is a Gram-negative, motile, sulfate-reducing bacterium isolated from water-saturated manganese carbonate ore. It is strictly anaerobic and does not require NaCl for growth, although NaCl concentrations up to 6% (w/v) are tolerated. The metabolism is respiratory or fermentative. In the presence of sulfate, pyruvate and lactate are incompletely oxidized to acetate and CO 2. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence of a member of the deltaproteobacterial family Desulfomicrobiaceae, and this 3,942,657 bp long single replicon genome with its 3494 protein-coding and 72 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - Anaerobe

KW - Desulfomicrobiaceae

KW - Free-living

KW - Freshwater

KW - Gram-negative

KW - Mesophile

KW - Non-pathogenic

KW - Sulfate reducer

UR - http://www.scopus.com/inward/record.url?scp=79960730905&partnerID=8YFLogxK

U2 - 10.4056/sigs.13134

DO - 10.4056/sigs.13134

M3 - Article

AN - SCOPUS:79960730905

VL - 1

SP - 29

EP - 37

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

SN - 1944-3277

IS - 1

ER -

ID: 90140975