Standard

Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460 T). / Kiss, Hajnalka; Lang, Elke; Lapidus, Alla; Copeland, Alex; Nolan, Matt; del Rio, Tijana Glavina; Chen, Feng; Lucas, Susan; Tice, Hope; Cheng, Jan Fang; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Pati, Amrita; Mavromatis, Konstantinos; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Detter, John C.; Brettin, Thomas; Spring, Stefan; Rohde, Manfred; Göker, Markus; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter.

In: Standards in Genomic Sciences, Vol. 2, No. 3, 2010, p. 270-279.

Research output: Contribution to journal › Article › peer-review

Harvard

Kiss, H, Lang, E, Lapidus, A, Copeland, A, Nolan, M, del Rio, TG, Chen, F, Lucas, S, Tice, H, Cheng, JF, Han, C, Goodwin, L, Pitluck, S, Liolios, K, Pati, A, Mavromatis, K, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Detter, JC, Brettin, T, Spring, S, Rohde, M, Göker, M, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC & Klenk, HP 2010, 'Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460 T)', Standards in Genomic Sciences, vol. 2, no. 3, pp. 270-279. https://doi.org/10.4056/sigs.892105

APA

Kiss, H., Lang, E., Lapidus, A., Copeland, A., Nolan, M., del Rio, T. G., Chen, F., Lucas, S., Tice, H., Cheng, J. F., Han, C., Goodwin, L., Pitluck, S., Liolios, K., Pati, A., Mavromatis, K., Chen, A., Palaniappan, K., Land, M., ... Klenk, H. P. (2010). Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460 T). Standards in Genomic Sciences, 2(3), 270-279. https://doi.org/10.4056/sigs.892105

Vancouver

Kiss H, Lang E, Lapidus A, Copeland A, Nolan M, del Rio TG et al. Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460 T). Standards in Genomic Sciences. 2010;2(3):270-279. https://doi.org/10.4056/sigs.892105

Author

Kiss, Hajnalka ; Lang, Elke ; Lapidus, Alla ; Copeland, Alex ; Nolan, Matt ; del Rio, Tijana Glavina ; Chen, Feng ; Lucas, Susan ; Tice, Hope ; Cheng, Jan Fang ; Han, Cliff ; Goodwin, Lynne ; Pitluck, Sam ; Liolios, Konstantinos ; Pati, Amrita ; Mavromatis, Konstantinos ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Detter, John C. ; Brettin, Thomas ; Spring, Stefan ; Rohde, Manfred ; Göker, Markus ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A. ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter. / Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460 T). In: Standards in Genomic Sciences. 2010 ; Vol. 2, No. 3. pp. 270-279.

BibTeX

@article{55c33f4c7b16444db91eb0ae1f94c0fc,
title = "Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460 T)",
abstract = "Denitrovibrio acetiphilus Myhr and Torsvik 2000 is the type species of the genus Denitrovi-brio in the bacterial family Deferribacteraceae. It is of phylogenetic interest because there are only six genera described in the family Deferribacteraceae. D. acetiphilus was isolated as a representative of a population reducing nitrate to ammonia in a laboratory column simulating the conditions in off-shore oil recovery fields. When nitrate was added to this column unde-sirable hydrogen sulfide production was stopped because the sulfate reducing populations were superseded by these nitrate reducing bacteria. Here we describe the features of this ma-rine, mesophilic, obligately anaerobic organism respiring by nitrate reduction, together with the complete genome sequence, and annotation. This is the second complete genome se-quence of the order Deferribacterales and the class Deferribacteres, which is the sole class in the phylum Deferribacteres. The 3,222,077 bp genome with its 3,034 protein-coding and 51 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.",
keywords = "Deferribacteraceae, Deferribacteres, Dissimilatory nitrate-reducer, Free-living, GEBA, Marine, Mesophile, Motile, Obligately anaerobic",
author = "Hajnalka Kiss and Elke Lang and Alla Lapidus and Alex Copeland and Matt Nolan and {del Rio}, {Tijana Glavina} and Feng Chen and Susan Lucas and Hope Tice and Cheng, {Jan Fang} and Cliff Han and Lynne Goodwin and Sam Pitluck and Konstantinos Liolios and Amrita Pati and Konstantinos Mavromatis and Amy Chen and Krishna Palaniappan and Miriam Land and Loren Hauser and Chang, {Yun Juan} and Jeffries, {Cynthia D.} and Detter, {John C.} and Thomas Brettin and Stefan Spring and Manfred Rohde and Markus G{\"o}ker and Tanja Woyke and James Bristow and Eisen, {Jonathan A.} and Victor Markowitz and Philip Hugenholtz and Kyrpides, {Nikos C.} and Klenk, {Hans Peter}",
note = "Funding Information: We would like to gratefully acknowledge the help of Markus Kopitz for growing the D. acetiphilus cells, and Susanne Schneider for DNA extraction and quality analysis (both at DSMZ). This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National Laboratory under contract No. DE-",
year = "2010",
doi = "10.4056/sigs.892105",
language = "English",
volume = "2",
pages = "270--279",
journal = "Standards in Genomic Sciences",
issn = "1944-3277",
publisher = "Michigan State University",
number = "3",

}

RIS

TY - JOUR

T1 - Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460 T)

AU - Kiss, Hajnalka

AU - Lang, Elke

AU - Lapidus, Alla

AU - Copeland, Alex

AU - Nolan, Matt

AU - del Rio, Tijana Glavina

AU - Chen, Feng

AU - Lucas, Susan

AU - Tice, Hope

AU - Cheng, Jan Fang

AU - Han, Cliff

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Liolios, Konstantinos

AU - Pati, Amrita

AU - Mavromatis, Konstantinos

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Land, Miriam

AU - Hauser, Loren

AU - Chang, Yun Juan

AU - Jeffries, Cynthia D.

AU - Detter, John C.

AU - Brettin, Thomas

AU - Spring, Stefan

AU - Rohde, Manfred

AU - Göker, Markus

AU - Woyke, Tanja

AU - Bristow, James

AU - Eisen, Jonathan A.

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

N1 - Funding Information: We would like to gratefully acknowledge the help of Markus Kopitz for growing the D. acetiphilus cells, and Susanne Schneider for DNA extraction and quality analysis (both at DSMZ). This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National Laboratory under contract No. DE-

PY - 2010

Y1 - 2010

N2 - Denitrovibrio acetiphilus Myhr and Torsvik 2000 is the type species of the genus Denitrovi-brio in the bacterial family Deferribacteraceae. It is of phylogenetic interest because there are only six genera described in the family Deferribacteraceae. D. acetiphilus was isolated as a representative of a population reducing nitrate to ammonia in a laboratory column simulating the conditions in off-shore oil recovery fields. When nitrate was added to this column unde-sirable hydrogen sulfide production was stopped because the sulfate reducing populations were superseded by these nitrate reducing bacteria. Here we describe the features of this ma-rine, mesophilic, obligately anaerobic organism respiring by nitrate reduction, together with the complete genome sequence, and annotation. This is the second complete genome se-quence of the order Deferribacterales and the class Deferribacteres, which is the sole class in the phylum Deferribacteres. The 3,222,077 bp genome with its 3,034 protein-coding and 51 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Denitrovibrio acetiphilus Myhr and Torsvik 2000 is the type species of the genus Denitrovi-brio in the bacterial family Deferribacteraceae. It is of phylogenetic interest because there are only six genera described in the family Deferribacteraceae. D. acetiphilus was isolated as a representative of a population reducing nitrate to ammonia in a laboratory column simulating the conditions in off-shore oil recovery fields. When nitrate was added to this column unde-sirable hydrogen sulfide production was stopped because the sulfate reducing populations were superseded by these nitrate reducing bacteria. Here we describe the features of this ma-rine, mesophilic, obligately anaerobic organism respiring by nitrate reduction, together with the complete genome sequence, and annotation. This is the second complete genome se-quence of the order Deferribacterales and the class Deferribacteres, which is the sole class in the phylum Deferribacteres. The 3,222,077 bp genome with its 3,034 protein-coding and 51 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - Deferribacteraceae

KW - Deferribacteres

KW - Dissimilatory nitrate-reducer

KW - Free-living

KW - GEBA

KW - Marine

KW - Mesophile

KW - Motile

KW - Obligately anaerobic

UR - http://www.scopus.com/inward/record.url?scp=80053358800&partnerID=8YFLogxK

U2 - 10.4056/sigs.892105

DO - 10.4056/sigs.892105

M3 - Article

AN - SCOPUS:80053358800

VL - 2

SP - 270

EP - 279

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

SN - 1944-3277

IS - 3

ER -

ID: 88103947