Standard

Complete genome sequence of Arcobacter nitrofigilis type strain (CI T). / Pati, Amrita; Gronow, Sabine; Lapidus, Alla; Copeland, Alex; del Rio, Tijana Glavina; Nolan, Matt; Lucas, Susan; Tice, Hope; Cheng, Jan Fang; Han, Cliff; Chertkov, Olga; Bruce, David; Tapia, Roxanne; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Mavromatis, Konstantinos; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Detter, John C.; Rohde, Manfred; Göker, Markus; Bristow, James; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Klenk, Hans Peter; Kyrpides, Nikos C.

In: Standards in Genomic Sciences, Vol. 2, No. 3, 2010, p. 300-308.

Research output: Contribution to journal › Article › peer-review

Harvard

Pati, A, Gronow, S, Lapidus, A, Copeland, A, del Rio, TG, Nolan, M, Lucas, S, Tice, H, Cheng, JF, Han, C, Chertkov, O, Bruce, D, Tapia, R, Goodwin, L, Pitluck, S, Liolios, K, Mavromatis, K, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Detter, JC, Rohde, M, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Klenk, HP & Kyrpides, NC 2010, 'Complete genome sequence of Arcobacter nitrofigilis type strain (CI T)', Standards in Genomic Sciences, vol. 2, no. 3, pp. 300-308. https://doi.org/10.4056/sigs.912121

APA

Pati, A., Gronow, S., Lapidus, A., Copeland, A., del Rio, T. G., Nolan, M., Lucas, S., Tice, H., Cheng, J. F., Han, C., Chertkov, O., Bruce, D., Tapia, R., Goodwin, L., Pitluck, S., Liolios, K., Mavromatis, K., Chen, A., Palaniappan, K., ... Kyrpides, N. C. (2010). Complete genome sequence of Arcobacter nitrofigilis type strain (CI T). Standards in Genomic Sciences, 2(3), 300-308. https://doi.org/10.4056/sigs.912121

Vancouver

Pati A, Gronow S, Lapidus A, Copeland A, del Rio TG, Nolan M et al. Complete genome sequence of Arcobacter nitrofigilis type strain (CI T). Standards in Genomic Sciences. 2010;2(3):300-308. https://doi.org/10.4056/sigs.912121

Author

Pati, Amrita ; Gronow, Sabine ; Lapidus, Alla ; Copeland, Alex ; del Rio, Tijana Glavina ; Nolan, Matt ; Lucas, Susan ; Tice, Hope ; Cheng, Jan Fang ; Han, Cliff ; Chertkov, Olga ; Bruce, David ; Tapia, Roxanne ; Goodwin, Lynne ; Pitluck, Sam ; Liolios, Konstantinos ; Mavromatis, Konstantinos ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Detter, John C. ; Rohde, Manfred ; Göker, Markus ; Bristow, James ; Eisen, Jonathan A. ; Markowitz, Victor ; Hugenholtz, Philip ; Klenk, Hans Peter ; Kyrpides, Nikos C. / Complete genome sequence of Arcobacter nitrofigilis type strain (CI T). In: Standards in Genomic Sciences. 2010 ; Vol. 2, No. 3. pp. 300-308.

BibTeX

@article{4ff6c6334d424128a2bff7ea2ffb83f4,
title = "Complete genome sequence of Arcobacter nitrofigilis type strain (CI T)",
abstract = "Arcobacter nitrofigilis (McClung et al. 1983) Vandamme et al. 1991 is the type species of the genus Arcobacter in the family Campylobacteraceae within the Epsilonproteobacteria. The species was first described in 1983 as Campylobacter nitrofigilis [1] after its detection as a free-living, nitrogen-fixing Campylobacter species associated with Spartina alterniflora Loisel roots [2]. It is of phylogenetic interest because of its lifestyle as a symbiotic organism in a marine environment in contrast to many other Arcobacter species which are associated with warm-blooded animals and tend to be pathogenic. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first com-plete genome sequence of a type stain of the genus Arcobacter. The 3,192,235 bp genome with its 3,154 protein-coding and 70 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.",
keywords = "Campylobacteraceae, GEBA, Micro-anaerophilic, Motile, Nitrogen fixation, Spartina alterniflora loisel, Symbiotic",
author = "Amrita Pati and Sabine Gronow and Alla Lapidus and Alex Copeland and {del Rio}, {Tijana Glavina} and Matt Nolan and Susan Lucas and Hope Tice and Cheng, {Jan Fang} and Cliff Han and Olga Chertkov and David Bruce and Roxanne Tapia and Lynne Goodwin and Sam Pitluck and Konstantinos Liolios and Konstantinos Mavromatis and Amy Chen and Krishna Palaniappan and Miriam Land and Loren Hauser and Chang, {Yun Juan} and Jeffries, {Cynthia D.} and Detter, {John C.} and Manfred Rohde and Markus G{\"o}ker and James Bristow and Eisen, {Jonathan A.} and Victor Markowitz and Philip Hugenholtz and Klenk, {Hans Peter} and Kyrpides, {Nikos C.}",
note = "Funding Information: We would like to gratefully acknowledge the help of Sabine Welnitz for growing the A. nitrofigilis cells, and Susanne Schneider for DNA extraction and quality analysis (both at DSMZ). This work was performed under the auspices of the US Department of Energy Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National Laboratory under contract No. DE-",
year = "2010",
doi = "10.4056/sigs.912121",
language = "English",
volume = "2",
pages = "300--308",
journal = "Standards in Genomic Sciences",
issn = "1944-3277",
publisher = "Michigan State University",
number = "3",

}

RIS

TY - JOUR

T1 - Complete genome sequence of Arcobacter nitrofigilis type strain (CI T)

AU - Pati, Amrita

AU - Gronow, Sabine

AU - Lapidus, Alla

AU - Copeland, Alex

AU - del Rio, Tijana Glavina

AU - Nolan, Matt

AU - Lucas, Susan

AU - Tice, Hope

AU - Cheng, Jan Fang

AU - Han, Cliff

AU - Chertkov, Olga

AU - Bruce, David

AU - Tapia, Roxanne

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Liolios, Konstantinos

AU - Mavromatis, Konstantinos

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Land, Miriam

AU - Hauser, Loren

AU - Chang, Yun Juan

AU - Jeffries, Cynthia D.

AU - Detter, John C.

AU - Rohde, Manfred

AU - Göker, Markus

AU - Bristow, James

AU - Eisen, Jonathan A.

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Klenk, Hans Peter

AU - Kyrpides, Nikos C.

N1 - Funding Information: We would like to gratefully acknowledge the help of Sabine Welnitz for growing the A. nitrofigilis cells, and Susanne Schneider for DNA extraction and quality analysis (both at DSMZ). This work was performed under the auspices of the US Department of Energy Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National Laboratory under contract No. DE-

PY - 2010

Y1 - 2010

N2 - Arcobacter nitrofigilis (McClung et al. 1983) Vandamme et al. 1991 is the type species of the genus Arcobacter in the family Campylobacteraceae within the Epsilonproteobacteria. The species was first described in 1983 as Campylobacter nitrofigilis [1] after its detection as a free-living, nitrogen-fixing Campylobacter species associated with Spartina alterniflora Loisel roots [2]. It is of phylogenetic interest because of its lifestyle as a symbiotic organism in a marine environment in contrast to many other Arcobacter species which are associated with warm-blooded animals and tend to be pathogenic. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first com-plete genome sequence of a type stain of the genus Arcobacter. The 3,192,235 bp genome with its 3,154 protein-coding and 70 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Arcobacter nitrofigilis (McClung et al. 1983) Vandamme et al. 1991 is the type species of the genus Arcobacter in the family Campylobacteraceae within the Epsilonproteobacteria. The species was first described in 1983 as Campylobacter nitrofigilis [1] after its detection as a free-living, nitrogen-fixing Campylobacter species associated with Spartina alterniflora Loisel roots [2]. It is of phylogenetic interest because of its lifestyle as a symbiotic organism in a marine environment in contrast to many other Arcobacter species which are associated with warm-blooded animals and tend to be pathogenic. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first com-plete genome sequence of a type stain of the genus Arcobacter. The 3,192,235 bp genome with its 3,154 protein-coding and 70 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - Campylobacteraceae

KW - GEBA

KW - Micro-anaerophilic

KW - Motile

KW - Nitrogen fixation

KW - Spartina alterniflora loisel

KW - Symbiotic

UR - http://www.scopus.com/inward/record.url?scp=78751503218&partnerID=8YFLogxK

U2 - 10.4056/sigs.912121

DO - 10.4056/sigs.912121

M3 - Article

AN - SCOPUS:78751503218

VL - 2

SP - 300

EP - 308

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

SN - 1944-3277

IS - 3

ER -

ID: 90136613