Standard

Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA T). / Mavromatis, Konstantinos; Sikorski, Johannes; Lapidus, Alla; del Rio, Tijana Glavina; Copeland, Alex; Tice, Hope; Cheng, Jan Fang; Lucas, Susan; Chen, Feng; Nolan, Matt; Bruce, David; Goodwin, Lynne; Pitluck, Sam; Ovchinnikova, Galina; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Chain, Patrick; Meincke, Linda; Sims, David; Chertkov, Olga; Han, Cliff; Brettin, Thomas; Detter, John C.; Wahrenburg, Claudia; Rohde, Manfred; Pukall, Rüdiger; Göker, Markus; Bristow, Jim; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Klenk, Hans Peter; Kyrpides, Nikos C.

In: Standards in Genomic Sciences, Vol. 2, No. 1, 2010, p. 9-18.

Research output: Contribution to journal › Article › peer-review

Harvard

Mavromatis, K, Sikorski, J, Lapidus, A, del Rio, TG, Copeland, A, Tice, H, Cheng, JF, Lucas, S, Chen, F, Nolan, M, Bruce, D, Goodwin, L, Pitluck, S, Ovchinnikova, G, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Chain, P, Meincke, L, Sims, D, Chertkov, O, Han, C, Brettin, T, Detter, JC, Wahrenburg, C, Rohde, M, Pukall, R, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Klenk, HP & Kyrpides, NC 2010, 'Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA T)', Standards in Genomic Sciences, vol. 2, no. 1, pp. 9-18. https://doi.org/10.4056/sigs.591104

APA

Mavromatis, K., Sikorski, J., Lapidus, A., del Rio, T. G., Copeland, A., Tice, H., Cheng, J. F., Lucas, S., Chen, F., Nolan, M., Bruce, D., Goodwin, L., Pitluck, S., Ovchinnikova, G., Pati, A., Chen, A., Palaniappan, K., Land, M., Hauser, L., ... Kyrpides, N. C. (2010). Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA T). Standards in Genomic Sciences, 2(1), 9-18. https://doi.org/10.4056/sigs.591104

Vancouver

Mavromatis K, Sikorski J, Lapidus A, del Rio TG, Copeland A, Tice H et al. Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA T). Standards in Genomic Sciences. 2010;2(1):9-18. https://doi.org/10.4056/sigs.591104

Author

Mavromatis, Konstantinos ; Sikorski, Johannes ; Lapidus, Alla ; del Rio, Tijana Glavina ; Copeland, Alex ; Tice, Hope ; Cheng, Jan Fang ; Lucas, Susan ; Chen, Feng ; Nolan, Matt ; Bruce, David ; Goodwin, Lynne ; Pitluck, Sam ; Ovchinnikova, Galina ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Chain, Patrick ; Meincke, Linda ; Sims, David ; Chertkov, Olga ; Han, Cliff ; Brettin, Thomas ; Detter, John C. ; Wahrenburg, Claudia ; Rohde, Manfred ; Pukall, Rüdiger ; Göker, Markus ; Bristow, Jim ; Eisen, Jonathan A. ; Markowitz, Victor ; Hugenholtz, Philip ; Klenk, Hans Peter ; Kyrpides, Nikos C. / Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA T). In: Standards in Genomic Sciences. 2010 ; Vol. 2, No. 1. pp. 9-18.

BibTeX

@article{eccbdb69983a4a3a92043309af63946f,
title = "Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA T)",
abstract = "Alicyclobacillus acidocaldarius (Darland and Brock 1971) is the type species of the larger of the two genera in the bacillal family 'Alicyclobacillaceae'. A. acidocaldarius is a free-living and non-pathogenic organism, but may also be associated with food and fruit spoilage. Due to its acidophilic nature, several enzymes from this species have since long been subjected to detailed molecular and biochemical studies. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence of the family 'Alicyclobacillaceae'. The 3,205,686 bp long genome (chromosome and three plasmids) with its 3,153 protein-coding and 82 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.",
keywords = "Acidophilic, Aerobic, Food spoilage, GEBA, Non-motile but encodes flagellar genes, Non-pathogenic, Thermophile",
author = "Konstantinos Mavromatis and Johannes Sikorski and Alla Lapidus and {del Rio}, {Tijana Glavina} and Alex Copeland and Hope Tice and Cheng, {Jan Fang} and Susan Lucas and Feng Chen and Matt Nolan and David Bruce and Lynne Goodwin and Sam Pitluck and Galina Ovchinnikova and Amrita Pati and Amy Chen and Krishna Palaniappan and Miriam Land and Loren Hauser and Chang, {Yun Juan} and Jeffries, {Cynthia D.} and Patrick Chain and Linda Meincke and David Sims and Olga Chertkov and Cliff Han and Thomas Brettin and Detter, {John C.} and Claudia Wahrenburg and Manfred Rohde and R{\"u}diger Pukall and Markus G{\"o}ker and Jim Bristow and Eisen, {Jonathan A.} and Victor Markowitz and Philip Hugenholtz and Klenk, {Hans Peter} and Kyrpides, {Nikos C.}",
note = "Funding Information: We would like to gratefully acknowledge the help of Susanne Schneider (DSMZ) for DNA extraction and quality analysis. This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence",
year = "2010",
doi = "10.4056/sigs.591104",
language = "English",
volume = "2",
pages = "9--18",
journal = "Standards in Genomic Sciences",
issn = "1944-3277",
publisher = "Michigan State University",
number = "1",

}

RIS

TY - JOUR

T1 - Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA T)

AU - Mavromatis, Konstantinos

AU - Sikorski, Johannes

AU - Lapidus, Alla

AU - del Rio, Tijana Glavina

AU - Copeland, Alex

AU - Tice, Hope

AU - Cheng, Jan Fang

AU - Lucas, Susan

AU - Chen, Feng

AU - Nolan, Matt

AU - Bruce, David

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Ovchinnikova, Galina

AU - Pati, Amrita

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Land, Miriam

AU - Hauser, Loren

AU - Chang, Yun Juan

AU - Jeffries, Cynthia D.

AU - Chain, Patrick

AU - Meincke, Linda

AU - Sims, David

AU - Chertkov, Olga

AU - Han, Cliff

AU - Brettin, Thomas

AU - Detter, John C.

AU - Wahrenburg, Claudia

AU - Rohde, Manfred

AU - Pukall, Rüdiger

AU - Göker, Markus

AU - Bristow, Jim

AU - Eisen, Jonathan A.

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Klenk, Hans Peter

AU - Kyrpides, Nikos C.

N1 - Funding Information: We would like to gratefully acknowledge the help of Susanne Schneider (DSMZ) for DNA extraction and quality analysis. This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence

PY - 2010

Y1 - 2010

N2 - Alicyclobacillus acidocaldarius (Darland and Brock 1971) is the type species of the larger of the two genera in the bacillal family 'Alicyclobacillaceae'. A. acidocaldarius is a free-living and non-pathogenic organism, but may also be associated with food and fruit spoilage. Due to its acidophilic nature, several enzymes from this species have since long been subjected to detailed molecular and biochemical studies. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence of the family 'Alicyclobacillaceae'. The 3,205,686 bp long genome (chromosome and three plasmids) with its 3,153 protein-coding and 82 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Alicyclobacillus acidocaldarius (Darland and Brock 1971) is the type species of the larger of the two genera in the bacillal family 'Alicyclobacillaceae'. A. acidocaldarius is a free-living and non-pathogenic organism, but may also be associated with food and fruit spoilage. Due to its acidophilic nature, several enzymes from this species have since long been subjected to detailed molecular and biochemical studies. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence of the family 'Alicyclobacillaceae'. The 3,205,686 bp long genome (chromosome and three plasmids) with its 3,153 protein-coding and 82 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - Acidophilic

KW - Aerobic

KW - Food spoilage

KW - GEBA

KW - Non-motile but encodes flagellar genes

KW - Non-pathogenic

KW - Thermophile

UR - http://www.scopus.com/inward/record.url?scp=80053347239&partnerID=8YFLogxK

U2 - 10.4056/sigs.591104

DO - 10.4056/sigs.591104

M3 - Article

AN - SCOPUS:80053347239

VL - 2

SP - 9

EP - 18

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

SN - 1944-3277

IS - 1

ER -

ID: 90013252