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Comparative genomics reveals insights into avian genome evolution and adaptation. / Correction Zhang, G.; Li, C.; Li, Q.; Li, B.; Larkin, D.M.; Lee, C.; Storz, J.F.; Antunes, A.; Greenwold, M.J.; Meredith, R.W.; Ödeen, A.; Cui, J.; Zhou, Q.; Xu, L.; Pan, H.; Wang, Z.; Jin, L.; Zhang, P.; Hu, H.; Yang, W.; Hu, J.; Xiao, J.; Yang, Z.; Liu, Y.; Xie, Q.; Yu, H.; Lian, J.; Wen, P.; Zhang, F.; Li, H.; Zeng, Y.; Xiong, Z.; Liu, S.; Zhou, L.; Huang, Z.; An, N.; Wang, J.; Zheng, Q.; Xiong, Y.; Wang, G.; Wang, B.; Fan, Y.; Da Fonseca, R.R.; Alfaro-N ñez, A.; Schubert, M.; Orlando, L.; Mourier, T.; Howard, J.T.; Ganapathy, G.; Pfenning, A.; Whitney, O.; Rivas, M.V.; Hara, E.; Smith, J.; Farré, M.; Narayan, J.; Slavov, G.; Romanov, M.N.; Borges, R.; Machado, J.P.; Khan, I.; Springer, M.S.; Gatesy, J.; Hoffmann, F.G.; Opazo, J.C.; H stad, O.; Sawyer, R.H.; Kim, H.; Kim, K.-W.; Kim, H.J.; Cho, S.; Li, N.; Huang, Y.; Bruford, M.W.; Zhan, X.; Dixon, A.; Bertelsen, M.F.; Derryberry, E.; Warren, W.; Wilson, R.K.; Li, S.; Ray, D.A.; Green, R.E.; O'Brien, S.J.; Griffin, D.; Johnson, W.E.; Haussler, D.; Ryder, O.A.; Willerslev, E.; Graves, G.R.; Alström, P.; Fjelds, J.; Mindell, D.P.; Edwards, S.V.; Braun, E.L.; Rahbek, C.; Burt, D.W.; Houde, P.; Zhang, Y.; Yang, H.; Jarvis, E.D.; Gilbert, M.T.P.; Ye, C.; Liang, S.; Yan, Z.; Zepeda, M.L.; Campos, P.F.; Velazquez, A.M.V.; Samaniego, J.A.; Avila-Arcos, M.; Martin, M.D.; Barnett, R.; Ribeiro, A.M.; Mello, C.V.; Lovell, P.V.; Almeida, D.; Maldonado, E.; Pereira, J.; Sunagar, K.; Philip, S.; Dominguez-Bello, M.G.; Bunce, M.; Lambert, D.; Brumfield, R.T.; Sheldon, F.H.; Holmes, E.C.; Gardner, P.P.; Steeves, T.E.; Stadler, P.F.; Burge, S.W.; Lyons, E.; McCarthy, F.; Pitel, F.; Rhoads, D.; Froman, D.P.
In:
Science., No. 6215, 2014, p. 1311-1320.
Research output: Contribution to journal › Article › peer-review
Harvard
Correction Zhang, G, Li, C, Li, Q, Li, B, Larkin, DM, Lee, C, Storz, JF, Antunes, A, Greenwold, MJ, Meredith, RW, Ödeen, A, Cui, J, Zhou, Q, Xu, L, Pan, H, Wang, Z, Jin, L, Zhang, P, Hu, H, Yang, W, Hu, J, Xiao, J, Yang, Z, Liu, Y, Xie, Q, Yu, H, Lian, J, Wen, P, Zhang, F, Li, H, Zeng, Y, Xiong, Z, Liu, S, Zhou, L, Huang, Z, An, N, Wang, J, Zheng, Q, Xiong, Y, Wang, G, Wang, B, Fan, Y, Da Fonseca, RR, Alfaro-N ñez, A, Schubert, M, Orlando, L, Mourier, T, Howard, JT, Ganapathy, G, Pfenning, A, Whitney, O, Rivas, MV, Hara, E, Smith, J, Farré, M, Narayan, J, Slavov, G, Romanov, MN, Borges, R, Machado, JP, Khan, I, Springer, MS, Gatesy, J, Hoffmann, FG, Opazo, JC, H stad, O, Sawyer, RH, Kim, H, Kim, K-W, Kim, HJ, Cho, S, Li, N, Huang, Y, Bruford, MW, Zhan, X, Dixon, A, Bertelsen, MF, Derryberry, E, Warren, W, Wilson, RK, Li, S, Ray, DA, Green, RE
, O'Brien, SJ, Griffin, D, Johnson, WE, Haussler, D, Ryder, OA, Willerslev, E, Graves, GR, Alström, P, Fjelds, J, Mindell, DP, Edwards, SV, Braun, EL, Rahbek, C, Burt, DW, Houde, P, Zhang, Y, Yang, H, Jarvis, ED, Gilbert, MTP, Ye, C, Liang, S, Yan, Z, Zepeda, ML, Campos, PF, Velazquez, AMV, Samaniego, JA, Avila-Arcos, M, Martin, MD, Barnett, R, Ribeiro, AM, Mello, CV, Lovell, PV, Almeida, D, Maldonado, E, Pereira, J, Sunagar, K, Philip, S, Dominguez-Bello, MG, Bunce, M, Lambert, D, Brumfield, RT, Sheldon, FH, Holmes, EC, Gardner, PP, Steeves, TE, Stadler, PF, Burge, SW, Lyons, E, McCarthy, F, Pitel, F, Rhoads, D & Froman, DP 2014, '
Comparative genomics reveals insights into avian genome evolution and adaptation',
Science., no. 6215, pp. 1311-1320.
https://doi.org/10.1126/science.1251385APA
Correction Zhang, G., Li, C., Li, Q., Li, B., Larkin, D. M., Lee, C., Storz, J. F., Antunes, A., Greenwold, M. J., Meredith, R. W., Ödeen, A., Cui, J., Zhou, Q., Xu, L., Pan, H., Wang, Z., Jin, L., Zhang, P., Hu, H., ... Froman, D. P. (2014).
Comparative genomics reveals insights into avian genome evolution and adaptation.
Science., (6215), 1311-1320.
https://doi.org/10.1126/science.1251385Vancouver
Author
Correction Zhang, G. ; Li, C. ; Li, Q. ; Li, B. ; Larkin, D.M. ; Lee, C. ; Storz, J.F. ; Antunes, A. ; Greenwold, M.J. ; Meredith, R.W. ; Ödeen, A. ; Cui, J. ; Zhou, Q. ; Xu, L. ; Pan, H. ; Wang, Z. ; Jin, L. ; Zhang, P. ; Hu, H. ; Yang, W. ; Hu, J. ; Xiao, J. ; Yang, Z. ; Liu, Y. ; Xie, Q. ; Yu, H. ; Lian, J. ; Wen, P. ; Zhang, F. ; Li, H. ; Zeng, Y. ; Xiong, Z. ; Liu, S. ; Zhou, L. ; Huang, Z. ; An, N. ; Wang, J. ; Zheng, Q. ; Xiong, Y. ; Wang, G. ; Wang, B. ; Fan, Y. ; Da Fonseca, R.R. ; Alfaro-N ñez, A. ; Schubert, M. ; Orlando, L. ; Mourier, T. ; Howard, J.T. ; Ganapathy, G. ; Pfenning, A. ; Whitney, O. ; Rivas, M.V. ; Hara, E. ; Smith, J. ; Farré, M. ; Narayan, J. ; Slavov, G. ; Romanov, M.N. ; Borges, R. ; Machado, J.P. ; Khan, I. ; Springer, M.S. ; Gatesy, J. ; Hoffmann, F.G. ; Opazo, J.C. ; H stad, O. ; Sawyer, R.H. ; Kim, H. ; Kim, K.-W. ; Kim, H.J. ; Cho, S. ; Li, N. ; Huang, Y. ; Bruford, M.W. ; Zhan, X. ; Dixon, A. ; Bertelsen, M.F. ; Derryberry, E. ; Warren, W. ; Wilson, R.K. ; Li, S. ; Ray, D.A. ; Green, R.E.
; O'Brien, S.J. ; Griffin, D. ; Johnson, W.E. ; Haussler, D. ; Ryder, O.A. ; Willerslev, E. ; Graves, G.R. ; Alström, P. ; Fjelds, J. ; Mindell, D.P. ; Edwards, S.V. ; Braun, E.L. ; Rahbek, C. ; Burt, D.W. ; Houde, P. ; Zhang, Y. ; Yang, H. ; Jarvis, E.D. ; Gilbert, M.T.P. ; Ye, C. ; Liang, S. ; Yan, Z. ; Zepeda, M.L. ; Campos, P.F. ; Velazquez, A.M.V. ; Samaniego, J.A. ; Avila-Arcos, M. ; Martin, M.D. ; Barnett, R. ; Ribeiro, A.M. ; Mello, C.V. ; Lovell, P.V. ; Almeida, D. ; Maldonado, E. ; Pereira, J. ; Sunagar, K. ; Philip, S. ; Dominguez-Bello, M.G. ; Bunce, M. ; Lambert, D. ; Brumfield, R.T. ; Sheldon, F.H. ; Holmes, E.C. ; Gardner, P.P. ; Steeves, T.E. ; Stadler, P.F. ; Burge, S.W. ; Lyons, E. ; McCarthy, F. ; Pitel, F. ; Rhoads, D. ; Froman, D.P. /
Comparative genomics reveals insights into avian genome evolution and adaptation. In:
Science. 2014 ; No. 6215. pp. 1311-1320.
BibTeX
@article{256c8a6829d84333bd157043f1c3843d,
title = "Comparative genomics reveals insights into avian genome evolution and adaptation",
abstract = "Birds are the most species-rich class of tetrapod vertebrates and have wide relevance across many research fields. We explored bird macroevolution using full genomes from 48 avian species representing all major extant clades. The avian genome is principally characterized by its constrained size, which predominantly arose because of lineage-specific erosion of repetitive elements, large segmental deletions, and gene loss. Avian genomes furthermore show a remarkably high degree of evolutionary stasis at the levels of nucleotide sequence, gene synteny, and chromosomal structure. Despite this pattern of conservation, we detected many non-neutral evolutionary changes in protein-coding genes and noncoding regions. These analyses reveal that pan-avian genomic diversity covaries with adaptations to different lifestyles and convergent evolution of traits.",
author = "{Correction Zhang}, G. and C. Li and Q. Li and B. Li and D.M. Larkin and C. Lee and J.F. Storz and A. Antunes and M.J. Greenwold and R.W. Meredith and A. {\"O}deen and J. Cui and Q. Zhou and L. Xu and H. Pan and Z. Wang and L. Jin and P. Zhang and H. Hu and W. Yang and J. Hu and J. Xiao and Z. Yang and Y. Liu and Q. Xie and H. Yu and J. Lian and P. Wen and F. Zhang and H. Li and Y. Zeng and Z. Xiong and S. Liu and L. Zhou and Z. Huang and N. An and J. Wang and Q. Zheng and Y. Xiong and G. Wang and B. Wang and Y. Fan and {Da Fonseca}, R.R. and {Alfaro-N {\~n}ez}, A. and M. Schubert and L. Orlando and T. Mourier and J.T. Howard and G. Ganapathy and A. Pfenning and O. Whitney and M.V. Rivas and E. Hara and J. Smith and M. Farr{\'e} and J. Narayan and G. Slavov and M.N. Romanov and R. Borges and J.P. Machado and I. Khan and M.S. Springer and J. Gatesy and F.G. Hoffmann and J.C. Opazo and {H stad}, O. and R.H. Sawyer and H. Kim and K.-W. Kim and H.J. Kim and S. Cho and N. Li and Y. Huang and M.W. Bruford and X. Zhan and A. Dixon and M.F. Bertelsen and E. Derryberry and W. Warren and R.K. Wilson and S. Li and D.A. Ray and R.E. Green and S.J. O'Brien and D. Griffin and W.E. Johnson and D. Haussler and O.A. Ryder and E. Willerslev and G.R. Graves and P. Alstr{\"o}m and J. Fjelds and D.P. Mindell and S.V. Edwards and E.L. Braun and C. Rahbek and D.W. Burt and P. Houde and Y. Zhang and H. Yang and E.D. Jarvis and M.T.P. Gilbert and C. Ye and S. Liang and Z. Yan and M.L. Zepeda and P.F. Campos and A.M.V. Velazquez and J.A. Samaniego and M. Avila-Arcos and M.D. Martin and R. Barnett and A.M. Ribeiro and C.V. Mello and P.V. Lovell and D. Almeida and E. Maldonado and J. Pereira and K. Sunagar and S. Philip and M.G. Dominguez-Bello and M. Bunce and D. Lambert and R.T. Brumfield and F.H. Sheldon and E.C. Holmes and P.P. Gardner and T.E. Steeves and P.F. Stadler and S.W. Burge and E. Lyons and F. McCarthy and F. Pitel and D. Rhoads and D.P. Froman",
year = "2014",
doi = "10.1126/science.1251385",
language = "English",
pages = "1311--1320",
journal = "Science",
issn = "0036-8075",
publisher = "American Association for the Advancement of Science",
number = "6215",
}
RIS
TY - JOUR
T1 - Comparative genomics reveals insights into avian genome evolution and adaptation
AU - Correction Zhang, G.
AU - Li, C.
AU - Li, Q.
AU - Li, B.
AU - Larkin, D.M.
AU - Lee, C.
AU - Storz, J.F.
AU - Antunes, A.
AU - Greenwold, M.J.
AU - Meredith, R.W.
AU - Ödeen, A.
AU - Cui, J.
AU - Zhou, Q.
AU - Xu, L.
AU - Pan, H.
AU - Wang, Z.
AU - Jin, L.
AU - Zhang, P.
AU - Hu, H.
AU - Yang, W.
AU - Hu, J.
AU - Xiao, J.
AU - Yang, Z.
AU - Liu, Y.
AU - Xie, Q.
AU - Yu, H.
AU - Lian, J.
AU - Wen, P.
AU - Zhang, F.
AU - Li, H.
AU - Zeng, Y.
AU - Xiong, Z.
AU - Liu, S.
AU - Zhou, L.
AU - Huang, Z.
AU - An, N.
AU - Wang, J.
AU - Zheng, Q.
AU - Xiong, Y.
AU - Wang, G.
AU - Wang, B.
AU - Fan, Y.
AU - Da Fonseca, R.R.
AU - Alfaro-N ñez, A.
AU - Schubert, M.
AU - Orlando, L.
AU - Mourier, T.
AU - Howard, J.T.
AU - Ganapathy, G.
AU - Pfenning, A.
AU - Whitney, O.
AU - Rivas, M.V.
AU - Hara, E.
AU - Smith, J.
AU - Farré, M.
AU - Narayan, J.
AU - Slavov, G.
AU - Romanov, M.N.
AU - Borges, R.
AU - Machado, J.P.
AU - Khan, I.
AU - Springer, M.S.
AU - Gatesy, J.
AU - Hoffmann, F.G.
AU - Opazo, J.C.
AU - H stad, O.
AU - Sawyer, R.H.
AU - Kim, H.
AU - Kim, K.-W.
AU - Kim, H.J.
AU - Cho, S.
AU - Li, N.
AU - Huang, Y.
AU - Bruford, M.W.
AU - Zhan, X.
AU - Dixon, A.
AU - Bertelsen, M.F.
AU - Derryberry, E.
AU - Warren, W.
AU - Wilson, R.K.
AU - Li, S.
AU - Ray, D.A.
AU - Green, R.E.
AU - O'Brien, S.J.
AU - Griffin, D.
AU - Johnson, W.E.
AU - Haussler, D.
AU - Ryder, O.A.
AU - Willerslev, E.
AU - Graves, G.R.
AU - Alström, P.
AU - Fjelds, J.
AU - Mindell, D.P.
AU - Edwards, S.V.
AU - Braun, E.L.
AU - Rahbek, C.
AU - Burt, D.W.
AU - Houde, P.
AU - Zhang, Y.
AU - Yang, H.
AU - Jarvis, E.D.
AU - Gilbert, M.T.P.
AU - Ye, C.
AU - Liang, S.
AU - Yan, Z.
AU - Zepeda, M.L.
AU - Campos, P.F.
AU - Velazquez, A.M.V.
AU - Samaniego, J.A.
AU - Avila-Arcos, M.
AU - Martin, M.D.
AU - Barnett, R.
AU - Ribeiro, A.M.
AU - Mello, C.V.
AU - Lovell, P.V.
AU - Almeida, D.
AU - Maldonado, E.
AU - Pereira, J.
AU - Sunagar, K.
AU - Philip, S.
AU - Dominguez-Bello, M.G.
AU - Bunce, M.
AU - Lambert, D.
AU - Brumfield, R.T.
AU - Sheldon, F.H.
AU - Holmes, E.C.
AU - Gardner, P.P.
AU - Steeves, T.E.
AU - Stadler, P.F.
AU - Burge, S.W.
AU - Lyons, E.
AU - McCarthy, F.
AU - Pitel, F.
AU - Rhoads, D.
AU - Froman, D.P.
PY - 2014
Y1 - 2014
N2 - Birds are the most species-rich class of tetrapod vertebrates and have wide relevance across many research fields. We explored bird macroevolution using full genomes from 48 avian species representing all major extant clades. The avian genome is principally characterized by its constrained size, which predominantly arose because of lineage-specific erosion of repetitive elements, large segmental deletions, and gene loss. Avian genomes furthermore show a remarkably high degree of evolutionary stasis at the levels of nucleotide sequence, gene synteny, and chromosomal structure. Despite this pattern of conservation, we detected many non-neutral evolutionary changes in protein-coding genes and noncoding regions. These analyses reveal that pan-avian genomic diversity covaries with adaptations to different lifestyles and convergent evolution of traits.
AB - Birds are the most species-rich class of tetrapod vertebrates and have wide relevance across many research fields. We explored bird macroevolution using full genomes from 48 avian species representing all major extant clades. The avian genome is principally characterized by its constrained size, which predominantly arose because of lineage-specific erosion of repetitive elements, large segmental deletions, and gene loss. Avian genomes furthermore show a remarkably high degree of evolutionary stasis at the levels of nucleotide sequence, gene synteny, and chromosomal structure. Despite this pattern of conservation, we detected many non-neutral evolutionary changes in protein-coding genes and noncoding regions. These analyses reveal that pan-avian genomic diversity covaries with adaptations to different lifestyles and convergent evolution of traits.
U2 - 10.1126/science.1251385
DO - 10.1126/science.1251385
M3 - Article
SP - 1311
EP - 1320
JO - Science
JF - Science
SN - 0036-8075
IS - 6215
ER -
