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Assembly Graph Browser : interactive visualization of assembly graphs. / Mikheenko, Alla; Kolmogorov, Mikhail.

In: Bioinformatics, Vol. 35, No. 18, 15.09.2019, p. 3476-3478.

Research output: Contribution to journal › Article › peer-review

Harvard

Mikheenko, A & Kolmogorov, M 2019, 'Assembly Graph Browser: interactive visualization of assembly graphs', Bioinformatics, vol. 35, no. 18, pp. 3476-3478. https://doi.org/10.1093/bioinformatics/btz072

APA

Mikheenko, A., & Kolmogorov, M. (2019). Assembly Graph Browser: interactive visualization of assembly graphs. Bioinformatics, 35(18), 3476-3478. https://doi.org/10.1093/bioinformatics/btz072

Vancouver

Mikheenko A, Kolmogorov M. Assembly Graph Browser: interactive visualization of assembly graphs. Bioinformatics. 2019 Sep 15;35(18):3476-3478. https://doi.org/10.1093/bioinformatics/btz072

Author

Mikheenko, Alla ; Kolmogorov, Mikhail. / Assembly Graph Browser : interactive visualization of assembly graphs. In: Bioinformatics. 2019 ; Vol. 35, No. 18. pp. 3476-3478.

BibTeX

@article{ffe7a9f973224a589db9c4b3ab81273c,
title = "Assembly Graph Browser: interactive visualization of assembly graphs",
abstract = "Currently, most genome assembly projects focus on contigs and scaffolds rather than assembly graphs that provide a more comprehensive representation of an assembly. Since interactive visualization of large assembly graphs remains an open problem, we developed an Assembly Graph Browser (AGB) tool that visualizes large assembly graphs, extending the functionality of previously developed visualization approaches. AGB includes a number of novel functions including repeat analysis, construction of the contracted assembly graphs (i.e., the graphs obtained by collapsing a selected set of edges), and a new approach to visualizing large assembly graphs.Availability: http://www.github.com/almiheenko/AGB.Supplementary information: Supplementary data are available at Bioinformatics online.",
author = "Alla Mikheenko and Mikhail Kolmogorov",
note = "Publisher Copyright: {\textcopyright} 2019 The Author(s) 2019. Published by Oxford University Press. All rights reserved.",
year = "2019",
month = sep,
day = "15",
doi = "10.1093/bioinformatics/btz072",
language = "English",
volume = "35",
pages = "3476--3478",
journal = "Bioinformatics",
issn = "1367-4803",
publisher = "Oxford University Press",
number = "18",

}

RIS

TY - JOUR

T1 - Assembly Graph Browser

T2 - interactive visualization of assembly graphs

AU - Mikheenko, Alla

AU - Kolmogorov, Mikhail

N1 - Publisher Copyright: © 2019 The Author(s) 2019. Published by Oxford University Press. All rights reserved.

PY - 2019/9/15

Y1 - 2019/9/15

N2 - Currently, most genome assembly projects focus on contigs and scaffolds rather than assembly graphs that provide a more comprehensive representation of an assembly. Since interactive visualization of large assembly graphs remains an open problem, we developed an Assembly Graph Browser (AGB) tool that visualizes large assembly graphs, extending the functionality of previously developed visualization approaches. AGB includes a number of novel functions including repeat analysis, construction of the contracted assembly graphs (i.e., the graphs obtained by collapsing a selected set of edges), and a new approach to visualizing large assembly graphs.Availability: http://www.github.com/almiheenko/AGB.Supplementary information: Supplementary data are available at Bioinformatics online.

AB - Currently, most genome assembly projects focus on contigs and scaffolds rather than assembly graphs that provide a more comprehensive representation of an assembly. Since interactive visualization of large assembly graphs remains an open problem, we developed an Assembly Graph Browser (AGB) tool that visualizes large assembly graphs, extending the functionality of previously developed visualization approaches. AGB includes a number of novel functions including repeat analysis, construction of the contracted assembly graphs (i.e., the graphs obtained by collapsing a selected set of edges), and a new approach to visualizing large assembly graphs.Availability: http://www.github.com/almiheenko/AGB.Supplementary information: Supplementary data are available at Bioinformatics online.

UR - http://www.mendeley.com/research/assembly-graph-browser-interactive-visualization-assembly-graphs

UR - http://www.scopus.com/inward/record.url?scp=85072340063&partnerID=8YFLogxK

U2 - 10.1093/bioinformatics/btz072

DO - 10.1093/bioinformatics/btz072

M3 - Article

C2 - 30715194

VL - 35

SP - 3476

EP - 3478

JO - Bioinformatics

JF - Bioinformatics

SN - 1367-4803

IS - 18

ER -

ID: 43737539