Each year, 35–40 million cases of spinal cord injury (SCI) are registered worldwide. Among these, 80–100% of patients become disabled or die. In 20% of cases, disability results from neurogenic pelvic organ dysfunction (urination and defecation disorders). This study assessed the effectiveness of multilevel magnetic stimulation (MMS), which combines peripheral, spinal, and transcranial rhythmic magnetic stimulation techniques, in patients with SCI and neurogenic pelvic dysfunction. A total of 30 patients with traumatic SCI were examined. The control group (n=15) received standard therapy, while the experimental group (n=15) additionally underwent MMS. The results showed that MMS was most effective in patients with thoracic spinal cord injuries, demonstrating significant improvements in urinary outflow (p=0.024), bladder filling function (p=0.020), and compensation of urination according to the O. A. Perlmuter’s scale (p=0.038). No statistically significant improvement was observed in the control group. These findings suggest that MMS is a promising method for the rehabilitation of neurogenic pelvic dysfunction in patients with SCI.