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  1. 2020

  2. Using SPAdes De Novo Assembler

    Prjibelski, A., Antipov, D., Meleshko, D., Lapidus, A. & Korobeynikov, A., 19 Jun 2020, In: Current Protocols in Bioinformatics. 70, 1, e102.

    Research output: Contribution to journal › Article › peer-review

  3. 2019

  4. Extending rnaSPAdes functionality for hybrid transcriptome assembly

    Prjibelski, A., Bushmanova, E., Giordano, D., Mikheenko, A., Puglia, G., Antipov, D., Viatale, D. & Lapidus, A., 8 Nov 2019, In: BMC Bioinformatics. 20, S17, 2 p., O9.

    Research output: Contribution to journal › Meeting Abstract › peer-review

  5. RnaSPAdes: A de novo transcriptome assembler and its application to RNA-Seq data

    Bushmanova, E., Antipov, D., Lapidus, A. & Prjibelski, A. D., 18 Sep 2019, In: GigaScience. 8, 9, 13 p., giz100.

    Research output: Contribution to journal › Article › peer-review

  6. Plasmid detection and assembly in genomic and metagenomic datasets

    Antipov, D., Raiko, M., Lapidus, A. & Pevzner, P. A., 1 Jan 2019, In: Genome Research. 29, 6, p. 961-968 8 p.

    Research output: Contribution to journal › Article › peer-review

  7. 2018

  8. Versatile genome assembly evaluation with QUAST-LG

    Mikheenko, A., Prjibelski, A., Saveliev, V., Antipov, D. & Gurevich, A., 1 Jul 2018, In: Bioinformatics. 34, 13, p. i142-i150 9 p.

    Research output: Contribution to journal › Article › peer-review

  9. 2016

  10. PlasmidSPAdes: Assembling plasmids from whole genome sequencing data

    Antipov, D., Hartwick, N., Shen, M., Raiko, M., Lapidus, A. & Pevzner, P. A., 15 Nov 2016, In: Bioinformatics. 32, 22, p. 3380-3387 8 p.

    Research output: Contribution to journal › Article › peer-review

  11. RnaQUAST: A quality assessment tool for de novo transcriptome assemblies

    Bushmanova, E., Antipov, D., Lapidus, A., Suvorov, V. & Prjibelski, A. D., 15 Jul 2016, In: Bioinformatics. 32, 14, p. 2210-2212 3 p.

    Research output: Contribution to journal › Article › peer-review

  12. HybridSPAdes: An algorithm for hybrid assembly of short and long reads

    Antipov, D., Korobeynikov, A., McLean, J. S. & Pevzner, P. A., 1 Apr 2016, In: Bioinformatics. 32, 7, p. 1009-1015 7 p.

    Research output: Contribution to journal › Article › peer-review

  13. 2013

  14. Assembling genomes and mini-metagenomes from highly chimeric reads

    Nurk, S., Bankevich, A., Antipov, D., Gurevich, A., Korobeynikov, A., Lapidus, A., Prjibelsky, A., Pyshkin, A., Sirotkin, A., Sirotkin, Y., Stepanauskas, R., McLean, J., Lasken, R., Clingenpeel, S. R., Woyke, T., Tesler, G., Alekseyev, M. A. & Pevzner, P. A., 2013, Research in Computational Molecular Biology - 17th Annual International Conference, RECOMB 2013, Proceedings. p. 158-170 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7821 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  15. Pathset graphs: a novel approach for comprehensive utilization of paired reads in genome assembly

    Pham, S. K., Antipov, D., Sirotkin, A., Tesler, G., Pevzner, P. A. & Alekseyev, M. A., 2013, In: Journal of Computational Biology. 20, 4, p. 359-371

    Research output: Contribution to journal › Article

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