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  1. 2012

  2. Pathset graphs: A novel approach for comprehensive utilization of paired reads in genome assembly

    Pham, S. K., Antipov, D., Sirotkin, A., Tesler, G., Pevzner, P. A. & Alekseyev, M. A., 2012, Research in Computational Molecular Biology - 16th Annual International Conference, RECOMB 2012, Proceedings. p. 200-212 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7262 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  3. SPAdes: A new genome assembly algorithm and its applications to single-cell sequencing

    Bankevich, A., Nurk, S., Antipov, D., Gurevich, A. A., Dvorkin, M., Kulikov, A. S., Lesin, V. M., Nikolenko, S. I., Pham, S., Prjibelski, A. D., Pyshkin, A. V., Sirotkin, A. V., Vyahhi, N., Tesler, G., Alekseyev, M. A. & Pevzner, P. A., 1 May 2012, In: Journal of Computational Biology. 19, 5, p. 455-477 23 p.

    Research output: Contribution to journal › Article › peer-review

  4. 2013

  5. Assembling genomes and mini-metagenomes from highly chimeric reads

    Nurk, S., Bankevich, A., Antipov, D., Gurevich, A., Korobeynikov, A., Lapidus, A., Prjibelsky, A., Pyshkin, A., Sirotkin, A., Sirotkin, Y., Stepanauskas, R., McLean, J., Lasken, R., Clingenpeel, S. R., Woyke, T., Tesler, G., Alekseyev, M. A. & Pevzner, P. A., 2013, Research in Computational Molecular Biology - 17th Annual International Conference, RECOMB 2013, Proceedings. p. 158-170 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7821 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Research › peer-review

  6. Pathset graphs: a novel approach for comprehensive utilization of paired reads in genome assembly

    Pham, S. K., Antipov, D., Sirotkin, A., Tesler, G., Pevzner, P. A. & Alekseyev, M. A., 2013, In: Journal of Computational Biology. 20, 4, p. 359-371

    Research output: Contribution to journal › Article

  7. 2016

  8. HybridSPAdes: An algorithm for hybrid assembly of short and long reads

    Antipov, D., Korobeynikov, A., McLean, J. S. & Pevzner, P. A., 1 Apr 2016, In: Bioinformatics. 32, 7, p. 1009-1015 7 p.

    Research output: Contribution to journal › Article › peer-review

  9. RnaQUAST: A quality assessment tool for de novo transcriptome assemblies

    Bushmanova, E., Antipov, D., Lapidus, A., Suvorov, V. & Prjibelski, A. D., 15 Jul 2016, In: Bioinformatics. 32, 14, p. 2210-2212 3 p.

    Research output: Contribution to journal › Article › peer-review

  10. PlasmidSPAdes: Assembling plasmids from whole genome sequencing data

    Antipov, D., Hartwick, N., Shen, M., Raiko, M., Lapidus, A. & Pevzner, P. A., 15 Nov 2016, In: Bioinformatics. 32, 22, p. 3380-3387 8 p.

    Research output: Contribution to journal › Article › peer-review

  11. 2018

  12. Versatile genome assembly evaluation with QUAST-LG

    Mikheenko, A., Prjibelski, A., Saveliev, V., Antipov, D. & Gurevich, A., 1 Jul 2018, In: Bioinformatics. 34, 13, p. i142-i150 9 p.

    Research output: Contribution to journal › Article › peer-review

  13. 2019

  14. Plasmid detection and assembly in genomic and metagenomic datasets

    Antipov, D., Raiko, M., Lapidus, A. & Pevzner, P. A., 1 Jan 2019, In: Genome Research. 29, 6, p. 961-968 8 p.

    Research output: Contribution to journal › Article › peer-review

  15. RnaSPAdes: A de novo transcriptome assembler and its application to RNA-Seq data

    Bushmanova, E., Antipov, D., Lapidus, A. & Prjibelski, A. D., 18 Sep 2019, In: GigaScience. 8, 9, 13 p., giz100.

    Research output: Contribution to journal › Article › peer-review

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