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  1. 2021

  2. Pattern of taar5 expression in the human brain based on transcriptome datasets analysis

    Vaganova, A. N., Murtazina, R. Z., Shemyakova, T. S., Prjibelski, A. D., Katolikova, N. V. & Gainetdinov, R. R., 16 Aug 2021, In: International Journal of Molecular Sciences. 22, 16, 18 p., 8802.

    Research output: Contribution to journal › Article › peer-review

  3. Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

    Brooks, A., Pardo-Palacios, F., Reese, F., Carbonell-Sala, S., Diekhans, M., Liang, C., Wang, D., Williams, B., Adams, M., Behera, A., Lagarde, J., Li, H., Пржибельский, А., Balderrama-Gutierrez, G., Çelik, M. H., María, M. D., Denslow, N., Garcia-Reyero, N., Goetz, S., Hunter, M. & 17 others, Loveland, J., Menor, C., Moraga, D., Mudge, J., Takahashi, H., Tang, A., Youngworth, I., Carninci, P., Guigó, R., Tilgner, H. U., Wold, B., Vollmers, C., Sheynkman, G., Frankish, A., Au, K. F., Conesa, A. & Mortazavi, A., 3 Aug 2021, (Submitted) In: Nature Methods.

    Research output: Contribution to journal › Article › peer-review

  4. A spatially resolved brain region- and cell type-specific isoform atlas of the postnatal mouse brain

    Joglekar, A., Prjibelski, A., Mahfouz, A., Collier, P., Lin, S., Schlusche, A. K., Marrocco, J., Williams, S. R., Haase, B., Hayes, A., Chew, J. G., Weisenfeld, N. I., Wong, M. Y., Stein, A. N., Hardwick, S. A., Hunt, T., Wang, Q., Dieterich, C., Bent, Z., Fedrigo, O. & 10 others, Sloan, S. A., Risso, D., Jarvis, E. D., Flicek, P., Luo, W., Pitt, G. S., Frankish, A., Smit, A. B., Ross, M. E. & Tilgner, H. U., 19 Jan 2021, In: Nature Communications. 12, 1, 16 p., 463.

    Research output: Contribution to journal › Article › peer-review

  5. 2020

  6. Understanding complex dynamics of behavioral, neurochemical and transcriptomic changes induced by prolonged chronic unpredictable stress in zebrafish

    Demin, K. A., Lakstygal, A. M., Krotova, N. A., Masharsky, A., Tagawa, N., Chernysh, M. V., Ilyin, N. P., Taranov, A. S., Galstyan, D. S., Derzhavina, K. A., Levchenko, N. A., Kolesnikova, T. O., Mor, M. S., Vasyutina, M. L., Efimova, E. V., Katolikova, N., Prjibelski, A. D., Gainetdinov, R. R., de Abreu, M. S., Amstislavskaya, T. G. & 2 others, Strekalova, T. & Kalueff, A. V., Dec 2020, In: Scientific Reports. 10, 1, 19981.

    Research output: Contribution to journal › Article › peer-review

  7. Human pericentromeric tandemly repeated DNA is transcribed at the end of oocyte maturation and is associated with membraneless mitochondria-associated structures

    Dobrynin, M. A., Korchagina, N. M., Prjibelski, A. D., Shafranskaya, D., Ostromyshenskii, D. I., Shunkina, K., Stepanova, I., Kotova, A. V., Podgornaya, O. I. & Enukashvily, N. I., 12 Nov 2020, In: Scientific Reports. 10, 1, 15 p., 19634.

    Research output: Contribution to journal › Article › peer-review

  8. Liquid drop of DNA libraries reveals total genome information

    Terekhov, S. S., Eliseev, I. E., Ovchinnikova, L. A., Kabilov, M. R., Prjibelski, A. D., Tupikin, A. E., Smirnov, I. V., Belogurov, A. A., Severinov, K. V., Lomakin, Y. A., Altman, S. & Gabibov, A. G., 3 Nov 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 44, p. 27300-27306 7 p.

    Research output: Contribution to journal › Article › peer-review

  9. Seed transcriptome annotation reveals enhanced expression of genes related to ros homeostasis and ethylene metabolism at alternating temperatures in wild cardoon

    Huarte, H. R., Puglia, G. D., Prjibelski, A. D. & Raccuia, S. A., Sep 2020, In: Plants. 9, 9, p. 1-19 19 p., 1225.

    Research output: Contribution to journal › Article › peer-review

  10. Hybrid transcriptome sequencing approach improved assembly and gene annotation in Cynara cardunculus (L.)

    Puglia, G. D., Prjibelski, A. D., Vitale, D., Bushmanova, E., Schmid, K. J. & Raccuia, S. A., 21 Aug 2020, In: BMC Genomics. 21, 1, 17 p., 317.

    Research output: Contribution to journal › Article › peer-review

  11. Extending rnaSPAdes functionality for hybrid transcriptome assembly

    Prjibelski, A. D., Puglia, G. D., Antipov, D., Bushmanova, E., Giordano, D., Mikheenko, A., Vitale, D. & Lapidus, A., 24 Jul 2020, In: BMC Bioinformatics. 21, Suppl 12, p. 302 9 p., 302.

    Research output: Contribution to journal › Article › peer-review

  12. Using SPAdes De Novo Assembler

    Prjibelski, A., Antipov, D., Meleshko, D., Lapidus, A. & Korobeynikov, A., 19 Jun 2020, In: Current Protocols in Bioinformatics. 70, 1, e102.

    Research output: Contribution to journal › Article › peer-review

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