SGTK: a toolkit for visualization and assessment of scaffold graphs

O. Kunyavskaya, A.D. Prjibelski

Результат исследований: Научные публикации в периодических изданияхстатья

1 цитирование (Scopus)

Выдержка

Scaffolding is an important step in every genome assembly pipeline, which allows to order contigs into longer sequences using various types of linkage information, such as mate-pair libraries and long reads. In this work, we operate with a notion of a scaffold graph-a graph, verti-ces of which correspond to the assembled contigs and edges represent connections between them. We present a software package called Scaffold Graph ToolKit that allows to construct and visualize scaffold graphs using different kinds of sequencing data. We show that the scaffold graph appears to be useful for analyzing and assessing genome assemblies, and demonstrate several use cases that can be helpful for both assembly software developers and their users.
Язык оригиналаанглийский
Страницы (с-по)2303-2305
Число страниц3
ЖурналBioinformatics
Том35
Номер выпуска13
DOI
СостояниеОпубликовано - 1 июл 2019

Отпечаток

Scaffold
Scaffolds
Software
Visualization
Genome
Graph in graph theory
Libraries
Genes
Software packages
Use Case
Software Package
Pipelines
Linkage
Sequencing
Demonstrate

Предметные области Scopus

  • Теория вероятности и статистика
  • Биохимия
  • Молекулярная биология
  • Прикладные компьютерные науки
  • Математика и теория расчета
  • Вычислительная математика

Цитировать

Kunyavskaya, O. ; Prjibelski, A.D. / SGTK: a toolkit for visualization and assessment of scaffold graphs. В: Bioinformatics. 2019 ; Том 35, № 13. стр. 2303-2305.
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SGTK: a toolkit for visualization and assessment of scaffold graphs. / Kunyavskaya, O.; Prjibelski, A.D.

В: Bioinformatics, Том 35, № 13, 01.07.2019, стр. 2303-2305.

Результат исследований: Научные публикации в периодических изданияхстатья

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