Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes

Sina M. Adl, David Bass, Christopher E. Lane, Julius Lukeš, Conrad L. Schoch, Alexey Smirnov, Sabine Agatha, Cedric Berney, Matthew W. Brown, Fabien Burki, Paco Cárdenas, Ivan Čepička, Lyudmila Chistyakova, Javier del Campo, Micah Dunthorn, Bente Edvardsen, Yana Eglit, Laure Guillou, Vladimír Hampl, Aaron A. Heiss & 27 другие Mona Hoppenrath, Timothy Y. James, Anna Karnkowska, Sergey Karpov, Eunsoo Kim, Martin Kolisko, Alexander Kudryavtsev, Daniel J.G. Lahr, Enrique Lara, Line Le Gall, Denis H. Lynn, David G. Mann, Ramon Massana, Edward A.D. Mitchell, Christine Morrow, Jong Soo Park, Jan W. Pawlowski, Martha J. Powell, Daniel J. Richter, Sonja Rueckert, Lora Shadwick, Satoshi Shimano, Frederick W. Spiegel, Guifré Torruella, Noha Youssef, Vasily Zlatogursky, Qianqian Zhang

Результат исследований: Научные публикации в периодических изданияхстатьянаучнаярецензирование

26 Цитирования (Scopus)

Выдержка

This revision of the classification of eukaryotes follows that of Adl et al., 2012 [J. Euk. Microbiol. 59(5)] and retains an emphasis on protists. Changes since have improved the resolution of many nodes in phylogenetic analyses. For some clades even families are being clearly resolved. As we had predicted, environmental sampling in the intervening years has massively increased the genetic information at hand. Consequently, we have discovered novel clades, exciting new genera and uncovered a massive species level diversity beyond the morphological species descriptions. Several clades known from environmental samples only have now found their home. Sampling soils, deeper marine waters and the deep sea will continue to fill us with surprises. The main changes in this revision are the confirmation that eukaryotes form at least two domains, the loss of monophyly in the Excavata, robust support for the Haptista and Cryptista. We provide suggested primer sets for DNA sequences from environmental samples that are effective for each clade. We have provided a guide to trophic functional guilds in an appendix, to facilitate the interpretation of environmental samples, and a standardized taxonomic guide for East Asian users.

Язык оригиналаанглийский
Страницы (с-по)4-119
ЖурналJournal of Eukaryotic Microbiology
Том66
Номер выпуска1
Ранняя дата в режиме онлайн26 сен 2018
DOI
СостояниеОпубликовано - 1 янв 2019

Ключевые слова

    Предметные области Scopus

    • Микробиология

    Цитировать

    Adl, Sina M. ; Bass, David ; Lane, Christopher E. ; Lukeš, Julius ; Schoch, Conrad L. ; Smirnov, Alexey ; Agatha, Sabine ; Berney, Cedric ; Brown, Matthew W. ; Burki, Fabien ; Cárdenas, Paco ; Čepička, Ivan ; Chistyakova, Lyudmila ; del Campo, Javier ; Dunthorn, Micah ; Edvardsen, Bente ; Eglit, Yana ; Guillou, Laure ; Hampl, Vladimír ; Heiss, Aaron A. ; Hoppenrath, Mona ; James, Timothy Y. ; Karnkowska, Anna ; Karpov, Sergey ; Kim, Eunsoo ; Kolisko, Martin ; Kudryavtsev, Alexander ; Lahr, Daniel J.G. ; Lara, Enrique ; Le Gall, Line ; Lynn, Denis H. ; Mann, David G. ; Massana, Ramon ; Mitchell, Edward A.D. ; Morrow, Christine ; Park, Jong Soo ; Pawlowski, Jan W. ; Powell, Martha J. ; Richter, Daniel J. ; Rueckert, Sonja ; Shadwick, Lora ; Shimano, Satoshi ; Spiegel, Frederick W. ; Torruella, Guifré ; Youssef, Noha ; Zlatogursky, Vasily ; Zhang, Qianqian. / Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes. В: Journal of Eukaryotic Microbiology. 2019 ; Том 66, № 1. стр. 4-119.
    @article{d3b53d4b11ac4915960c36c912ab46ec,
    title = "Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes",
    abstract = "This revision of the classification of eukaryotes follows that of Adl et al., 2012 [J. Euk. Microbiol. 59(5)] and retains an emphasis on protists. Changes since have improved the resolution of many nodes in phylogenetic analyses. For some clades even families are being clearly resolved. As we had predicted, environmental sampling in the intervening years has massively increased the genetic information at hand. Consequently, we have discovered novel clades, exciting new genera and uncovered a massive species level diversity beyond the morphological species descriptions. Several clades known from environmental samples only have now found their home. Sampling soils, deeper marine waters and the deep sea will continue to fill us with surprises. The main changes in this revision are the confirmation that eukaryotes form at least two domains, the loss of monophyly in the Excavata, robust support for the Haptista and Cryptista. We provide suggested primer sets for DNA sequences from environmental samples that are effective for each clade. We have provided a guide to trophic functional guilds in an appendix, to facilitate the interpretation of environmental samples, and a standardized taxonomic guide for East Asian users.",
    keywords = "Algae, amoebae, biodiversity, ciliate, ecology, flagellate, fungus, microbiology, parasite, plankton, protozoa, systematics, taxonomy",
    author = "Adl, {Sina M.} and David Bass and Lane, {Christopher E.} and Julius Lukeš and Schoch, {Conrad L.} and Alexey Smirnov and Sabine Agatha and Cedric Berney and Brown, {Matthew W.} and Fabien Burki and Paco C{\'a}rdenas and Ivan Čepička and Lyudmila Chistyakova and {del Campo}, Javier and Micah Dunthorn and Bente Edvardsen and Yana Eglit and Laure Guillou and Vladim{\'i}r Hampl and Heiss, {Aaron A.} and Mona Hoppenrath and James, {Timothy Y.} and Anna Karnkowska and Sergey Karpov and Eunsoo Kim and Martin Kolisko and Alexander Kudryavtsev and Lahr, {Daniel J.G.} and Enrique Lara and {Le Gall}, Line and Lynn, {Denis H.} and Mann, {David G.} and Ramon Massana and Mitchell, {Edward A.D.} and Christine Morrow and Park, {Jong Soo} and Pawlowski, {Jan W.} and Powell, {Martha J.} and Richter, {Daniel J.} and Sonja Rueckert and Lora Shadwick and Satoshi Shimano and Spiegel, {Frederick W.} and Guifr{\'e} Torruella and Noha Youssef and Vasily Zlatogursky and Qianqian Zhang",
    year = "2019",
    month = "1",
    day = "1",
    doi = "doi.org/10.1111/jeu.12691",
    language = "English",
    volume = "66",
    pages = "4--119",
    journal = "Journal of Eukaryotic Microbiology",
    issn = "1066-5234",
    publisher = "Wiley-Blackwell",
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    Adl, SM, Bass, D, Lane, CE, Lukeš, J, Schoch, CL, Smirnov, A, Agatha, S, Berney, C, Brown, MW, Burki, F, Cárdenas, P, Čepička, I, Chistyakova, L, del Campo, J, Dunthorn, M, Edvardsen, B, Eglit, Y, Guillou, L, Hampl, V, Heiss, AA, Hoppenrath, M, James, TY, Karnkowska, A, Karpov, S, Kim, E, Kolisko, M, Kudryavtsev, A, Lahr, DJG, Lara, E, Le Gall, L, Lynn, DH, Mann, DG, Massana, R, Mitchell, EAD, Morrow, C, Park, JS, Pawlowski, JW, Powell, MJ, Richter, DJ, Rueckert, S, Shadwick, L, Shimano, S, Spiegel, FW, Torruella, G, Youssef, N, Zlatogursky, V & Zhang, Q 2019, 'Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes' Journal of Eukaryotic Microbiology, том. 66, № 1, стр. 4-119. https://doi.org/doi.org/10.1111/jeu.12691, https://doi.org/10.1111/jeu.12691

    Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes. / Adl, Sina M.; Bass, David; Lane, Christopher E.; Lukeš, Julius; Schoch, Conrad L.; Smirnov, Alexey; Agatha, Sabine; Berney, Cedric; Brown, Matthew W.; Burki, Fabien; Cárdenas, Paco; Čepička, Ivan; Chistyakova, Lyudmila; del Campo, Javier; Dunthorn, Micah; Edvardsen, Bente; Eglit, Yana; Guillou, Laure; Hampl, Vladimír; Heiss, Aaron A.; Hoppenrath, Mona; James, Timothy Y.; Karnkowska, Anna; Karpov, Sergey; Kim, Eunsoo; Kolisko, Martin; Kudryavtsev, Alexander; Lahr, Daniel J.G.; Lara, Enrique; Le Gall, Line; Lynn, Denis H.; Mann, David G.; Massana, Ramon; Mitchell, Edward A.D.; Morrow, Christine; Park, Jong Soo; Pawlowski, Jan W.; Powell, Martha J.; Richter, Daniel J.; Rueckert, Sonja; Shadwick, Lora; Shimano, Satoshi; Spiegel, Frederick W.; Torruella, Guifré; Youssef, Noha; Zlatogursky, Vasily; Zhang, Qianqian.

    В: Journal of Eukaryotic Microbiology, Том 66, № 1, 01.01.2019, стр. 4-119.

    Результат исследований: Научные публикации в периодических изданияхстатьянаучнаярецензирование

    TY - JOUR

    T1 - Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes

    AU - Adl, Sina M.

    AU - Bass, David

    AU - Lane, Christopher E.

    AU - Lukeš, Julius

    AU - Schoch, Conrad L.

    AU - Smirnov, Alexey

    AU - Agatha, Sabine

    AU - Berney, Cedric

    AU - Brown, Matthew W.

    AU - Burki, Fabien

    AU - Cárdenas, Paco

    AU - Čepička, Ivan

    AU - Chistyakova, Lyudmila

    AU - del Campo, Javier

    AU - Dunthorn, Micah

    AU - Edvardsen, Bente

    AU - Eglit, Yana

    AU - Guillou, Laure

    AU - Hampl, Vladimír

    AU - Heiss, Aaron A.

    AU - Hoppenrath, Mona

    AU - James, Timothy Y.

    AU - Karnkowska, Anna

    AU - Karpov, Sergey

    AU - Kim, Eunsoo

    AU - Kolisko, Martin

    AU - Kudryavtsev, Alexander

    AU - Lahr, Daniel J.G.

    AU - Lara, Enrique

    AU - Le Gall, Line

    AU - Lynn, Denis H.

    AU - Mann, David G.

    AU - Massana, Ramon

    AU - Mitchell, Edward A.D.

    AU - Morrow, Christine

    AU - Park, Jong Soo

    AU - Pawlowski, Jan W.

    AU - Powell, Martha J.

    AU - Richter, Daniel J.

    AU - Rueckert, Sonja

    AU - Shadwick, Lora

    AU - Shimano, Satoshi

    AU - Spiegel, Frederick W.

    AU - Torruella, Guifré

    AU - Youssef, Noha

    AU - Zlatogursky, Vasily

    AU - Zhang, Qianqian

    PY - 2019/1/1

    Y1 - 2019/1/1

    N2 - This revision of the classification of eukaryotes follows that of Adl et al., 2012 [J. Euk. Microbiol. 59(5)] and retains an emphasis on protists. Changes since have improved the resolution of many nodes in phylogenetic analyses. For some clades even families are being clearly resolved. As we had predicted, environmental sampling in the intervening years has massively increased the genetic information at hand. Consequently, we have discovered novel clades, exciting new genera and uncovered a massive species level diversity beyond the morphological species descriptions. Several clades known from environmental samples only have now found their home. Sampling soils, deeper marine waters and the deep sea will continue to fill us with surprises. The main changes in this revision are the confirmation that eukaryotes form at least two domains, the loss of monophyly in the Excavata, robust support for the Haptista and Cryptista. We provide suggested primer sets for DNA sequences from environmental samples that are effective for each clade. We have provided a guide to trophic functional guilds in an appendix, to facilitate the interpretation of environmental samples, and a standardized taxonomic guide for East Asian users.

    AB - This revision of the classification of eukaryotes follows that of Adl et al., 2012 [J. Euk. Microbiol. 59(5)] and retains an emphasis on protists. Changes since have improved the resolution of many nodes in phylogenetic analyses. For some clades even families are being clearly resolved. As we had predicted, environmental sampling in the intervening years has massively increased the genetic information at hand. Consequently, we have discovered novel clades, exciting new genera and uncovered a massive species level diversity beyond the morphological species descriptions. Several clades known from environmental samples only have now found their home. Sampling soils, deeper marine waters and the deep sea will continue to fill us with surprises. The main changes in this revision are the confirmation that eukaryotes form at least two domains, the loss of monophyly in the Excavata, robust support for the Haptista and Cryptista. We provide suggested primer sets for DNA sequences from environmental samples that are effective for each clade. We have provided a guide to trophic functional guilds in an appendix, to facilitate the interpretation of environmental samples, and a standardized taxonomic guide for East Asian users.

    KW - Algae

    KW - amoebae

    KW - biodiversity

    KW - ciliate

    KW - ecology

    KW - flagellate

    KW - fungus

    KW - microbiology

    KW - parasite

    KW - plankton

    KW - protozoa

    KW - systematics

    KW - taxonomy

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    UR - https://genev.unige.ch/publication/2847

    UR - https://www.mendeley.com/catalogue/revisions-classification-nomenclature-diversity-eukaryotes/

    U2 - doi.org/10.1111/jeu.12691

    DO - doi.org/10.1111/jeu.12691

    M3 - Article

    VL - 66

    SP - 4

    EP - 119

    JO - Journal of Eukaryotic Microbiology

    JF - Journal of Eukaryotic Microbiology

    SN - 1066-5234

    IS - 1

    ER -