Mitochondrial DNA D-loop haplogroup contributions to the genetic diversity of East European domestic chickens from Russia

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Mitochondrial DNA D-loop haplogroup contributions to the genetic diversity of East European domestic chickens from Russia. / Dyomin, A. G.; Danilova, M. I.; Mwacharo, J. M.; Masharsky, A. E.; Panteleev, A. V.; Druzhkova, A. S.; Trifonov, V. A.; Galkina, S. A.

в: Journal of Animal Breeding and Genetics, Том 134, № 2, 01.04.2017, стр. 98-108.

Результаты исследований: Научные публикации в периодических изданиях › статья › Рецензирование

Author

Dyomin, A. G. ; Danilova, M. I. ; Mwacharo, J. M. ; Masharsky, A. E. ; Panteleev, A. V. ; Druzhkova, A. S. ; Trifonov, V. A. ; Galkina, S. A. / Mitochondrial DNA D-loop haplogroup contributions to the genetic diversity of East European domestic chickens from Russia. в: Journal of Animal Breeding and Genetics. 2017 ; Том 134, № 2. стр. 98-108.

BibTeX

@article{e0cdfa57e4f1425cbdf57637d5a6278c,

title = "Mitochondrial DNA D-loop haplogroup contributions to the genetic diversity of East European domestic chickens from Russia",

abstract = "To elucidate geographical and historical aspects of chicken dispersal across Eastern Europe, we analysed the complete mitochondrial DNA D-loop sequence of 86 representatives from chicken breeds traditionally raised in the territory of the East European Plain (Orloff, Pavlov, Russian White, Yurlov Crower, Uzbek Game and Naked Neck). From the 1231–1232 bp D-loop sequence, 35 variable sites that defined 22 haplotypes were identified in modern chicken. All populations, except Uzbek Game, exhibited high values of haplotype and nucleotide diversity suggesting a wide variation in maternal diversity. Inclusion of mtDNA sequences from other European and Asian countries revealed representatives from this study belonging to haplogroups A, E1 and C1. We also assessed fossil chicken material dated to the 9th–18th century from archaeological sites in Northern and Eastern Europe. Three haplotypes found in the fossil specimens belonged to haplogroup E1, while one sample dated to the 18th century was assigned to the C1 haplogroup. This is the first report of the occurrence of the C1 haplogroup in European chicken populations prior to the 20th century based on the fossil material. These results provide evidence for a relatively recent introduction of all haplotypes other than E1 into the East European chicken gene pool with the significant impact of the C1 haplogroup mainly distributed in Southern China.",

keywords = "Ancient DNA, dispersal of chickens, diversity, Gallus gallus, gene pool, maternal lineage",

author = "Dyomin, {A. G.} and Danilova, {M. I.} and Mwacharo, {J. M.} and Masharsky, {A. E.} and Panteleev, {A. V.} and Druzhkova, {A. S.} and Trifonov, {V. A.} and Galkina, {S. A.}",

note = "Funding Information: We are grateful to A.F. Yakovlev and A. Kocinian for assistance in sampling and to N. Grigorieva for fruitful discussion. We would like to acknowledge the assistance from staff of the Research Resource Centers ?Chromas?, ?Molecular and Cell Technologies? (Saint Petersburg State University, Saint Petersburg, Russia) and Core Facility ?Geochronology of Cenozoic? (Novosibirsk, Russia). This work was supported by Saint Petersburg State University (Grant Number 1.50.1043.2014) and the Russian Foundation of Basic Research (grant numbers 14 ? 04-01469 and 15-29-02384 to VT and AD). Publisher Copyright: {\textcopyright} 2016 Blackwell Verlag GmbH Copyright: Copyright 2017 Elsevier B.V., All rights reserved.",

year = "2017",

month = apr,

day = "1",

doi = "10.1111/jbg.12248",

language = "English",

volume = "134",

pages = "98--108",

journal = "Journal of Animal Breeding and Genetics",

issn = "0931-2668",

publisher = "Wiley-Blackwell",

number = "2",

}

RIS

TY - JOUR

T1 - Mitochondrial DNA D-loop haplogroup contributions to the genetic diversity of East European domestic chickens from Russia

AU - Dyomin, A. G.

AU - Danilova, M. I.

AU - Mwacharo, J. M.

AU - Masharsky, A. E.

AU - Panteleev, A. V.

AU - Druzhkova, A. S.

AU - Trifonov, V. A.

AU - Galkina, S. A.

N1 - Funding Information: We are grateful to A.F. Yakovlev and A. Kocinian for assistance in sampling and to N. Grigorieva for fruitful discussion. We would like to acknowledge the assistance from staff of the Research Resource Centers ?Chromas?, ?Molecular and Cell Technologies? (Saint Petersburg State University, Saint Petersburg, Russia) and Core Facility ?Geochronology of Cenozoic? (Novosibirsk, Russia). This work was supported by Saint Petersburg State University (Grant Number 1.50.1043.2014) and the Russian Foundation of Basic Research (grant numbers 14 ? 04-01469 and 15-29-02384 to VT and AD). Publisher Copyright: © 2016 Blackwell Verlag GmbH Copyright: Copyright 2017 Elsevier B.V., All rights reserved.

PY - 2017/4/1

Y1 - 2017/4/1

N2 - To elucidate geographical and historical aspects of chicken dispersal across Eastern Europe, we analysed the complete mitochondrial DNA D-loop sequence of 86 representatives from chicken breeds traditionally raised in the territory of the East European Plain (Orloff, Pavlov, Russian White, Yurlov Crower, Uzbek Game and Naked Neck). From the 1231–1232 bp D-loop sequence, 35 variable sites that defined 22 haplotypes were identified in modern chicken. All populations, except Uzbek Game, exhibited high values of haplotype and nucleotide diversity suggesting a wide variation in maternal diversity. Inclusion of mtDNA sequences from other European and Asian countries revealed representatives from this study belonging to haplogroups A, E1 and C1. We also assessed fossil chicken material dated to the 9th–18th century from archaeological sites in Northern and Eastern Europe. Three haplotypes found in the fossil specimens belonged to haplogroup E1, while one sample dated to the 18th century was assigned to the C1 haplogroup. This is the first report of the occurrence of the C1 haplogroup in European chicken populations prior to the 20th century based on the fossil material. These results provide evidence for a relatively recent introduction of all haplotypes other than E1 into the East European chicken gene pool with the significant impact of the C1 haplogroup mainly distributed in Southern China.

AB - To elucidate geographical and historical aspects of chicken dispersal across Eastern Europe, we analysed the complete mitochondrial DNA D-loop sequence of 86 representatives from chicken breeds traditionally raised in the territory of the East European Plain (Orloff, Pavlov, Russian White, Yurlov Crower, Uzbek Game and Naked Neck). From the 1231–1232 bp D-loop sequence, 35 variable sites that defined 22 haplotypes were identified in modern chicken. All populations, except Uzbek Game, exhibited high values of haplotype and nucleotide diversity suggesting a wide variation in maternal diversity. Inclusion of mtDNA sequences from other European and Asian countries revealed representatives from this study belonging to haplogroups A, E1 and C1. We also assessed fossil chicken material dated to the 9th–18th century from archaeological sites in Northern and Eastern Europe. Three haplotypes found in the fossil specimens belonged to haplogroup E1, while one sample dated to the 18th century was assigned to the C1 haplogroup. This is the first report of the occurrence of the C1 haplogroup in European chicken populations prior to the 20th century based on the fossil material. These results provide evidence for a relatively recent introduction of all haplotypes other than E1 into the East European chicken gene pool with the significant impact of the C1 haplogroup mainly distributed in Southern China.

KW - Ancient DNA

KW - dispersal of chickens

KW - diversity

KW - Gallus gallus

KW - gene pool

KW - maternal lineage

UR - http://www.scopus.com/inward/record.url?scp=85007207600&partnerID=8YFLogxK

U2 - 10.1111/jbg.12248

DO - 10.1111/jbg.12248

M3 - Article

C2 - 27988972

VL - 134

SP - 98

EP - 108

JO - Journal of Animal Breeding and Genetics

JF - Journal of Animal Breeding and Genetics

SN - 0931-2668

IS - 2

ER -

ID: 7647798