MetaSPAdes: A new versatile metagenomic assembler

Sergey Nurk, Дмитрий Алексеевич Мелешко, Anton Korobeynikov, Pavel A. Pevzner

Результат исследований: Научные публикации в периодических изданияхстатья

273 Цитирования (Scopus)

Выдержка

While metagenomics has emerged as a technology of choice for analyzing bacterial populations, the assembly of metagenomic data remains challenging, thus stifling biological discoveries. Moreover, recent studies revealed that complex bacterial populations may be composed from dozens of related strains, thus further amplifying the challenge of metagenomic assembly. metaSPAdes addresses various challenges of metagenomic assembly by capitalizing on computational ideas that proved to be useful in assemblies of single cells and highly polymorphic diploid genomes. We benchmark metaSPAdes against other state-of-the-art metagenome assemblers and demonstrate that it results in high-quality assemblies across diverse data sets.

Язык оригиналаанглийский
Страницы (с-по)824-834
Число страниц11
ЖурналGenome Research
Том27
Номер выпуска5
DOI
СостояниеОпубликовано - 1 мая 2017

Отпечаток

Metagenomics
Metagenome
Benchmarking
Diploidy
Population
Genome
Technology

Предметные области Scopus

  • Генетика
  • Генетика (клиническая)

Цитировать

Nurk, S., Мелешко, Д. А., Korobeynikov, A., & Pevzner, P. A. (2017). MetaSPAdes: A new versatile metagenomic assembler. Genome Research, 27(5), 824-834. https://doi.org/10.1101/gr.213959.116
Nurk, Sergey ; Мелешко, Дмитрий Алексеевич ; Korobeynikov, Anton ; Pevzner, Pavel A. / MetaSPAdes : A new versatile metagenomic assembler. В: Genome Research. 2017 ; Том 27, № 5. стр. 824-834.
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Nurk, S, Мелешко, ДА, Korobeynikov, A & Pevzner, PA 2017, 'MetaSPAdes: A new versatile metagenomic assembler', Genome Research, том. 27, № 5, стр. 824-834. https://doi.org/10.1101/gr.213959.116

MetaSPAdes : A new versatile metagenomic assembler. / Nurk, Sergey; Мелешко, Дмитрий Алексеевич; Korobeynikov, Anton; Pevzner, Pavel A.

В: Genome Research, Том 27, № 5, 01.05.2017, стр. 824-834.

Результат исследований: Научные публикации в периодических изданияхстатья

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