Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314T)

Markus Göker, Elisabeth Saunders, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan Fang Cheng, Cliff Han, Roxanne Tapia, Lynne A. Goodwin, Sam Pitluck, Konstantinos Liolios, Konstantinos Mavromatis, Ioanna Pagani, Natalia Ivanova, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna PalaniappanMiriam Land, Yun Juan Chang, Cynthia D. Jeffries, Evelyne Marie Brambilla, Manfred Rohde, Stefan Spring, John C. Detter, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk

Результат исследований: Научные публикации в периодических изданияхстатья

15 Цитирования (Scopus)

Выдержка

Thermovirga lienii Dahle and Birkeland 2006 is a member of the genus Thermovirga in the genomically moderately well characterized phylum 'Synergistetes'. Members of this relatively recently proposed phylum 'Synergistetes' are of interest because of their isolated phylogenetic position and their diverse habitats, e.g. from humans to oil wells. The genome of T. lienii Cas60314T is the fifth genome sequence (third completed) from this phylum to be published. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 1,999,646 bp long genome (including one plasmid) with its 1,914 pro-tein-coding and 59 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Язык оригиналаанглийский
Страницы (с-по)230-239
Число страниц10
ЖурналStandards in Genomic Sciences
Том6
Номер выпуска2
DOI
СостояниеОпубликовано - 12 июл 2012

Отпечаток

Sulfur-Reducing Bacteria
Genome
Amino Acids
Encyclopedias
Oil and Gas Fields
Archaea
Ecosystem
Plasmids
RNA
Bacteria
Genes

Предметные области Scopus

  • Генетика

Цитировать

Göker, Markus ; Saunders, Elisabeth ; Lapidus, Alla ; Nolan, Matt ; Lucas, Susan ; Hammon, Nancy ; Deshpande, Shweta ; Cheng, Jan Fang ; Han, Cliff ; Tapia, Roxanne ; Goodwin, Lynne A. ; Pitluck, Sam ; Liolios, Konstantinos ; Mavromatis, Konstantinos ; Pagani, Ioanna ; Ivanova, Natalia ; Mikhailova, Natalia ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Brambilla, Evelyne Marie ; Rohde, Manfred ; Spring, Stefan ; Detter, John C. ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A. ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter. / Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314T). В: Standards in Genomic Sciences. 2012 ; Том 6, № 2. стр. 230-239.
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abstract = "Thermovirga lienii Dahle and Birkeland 2006 is a member of the genus Thermovirga in the genomically moderately well characterized phylum 'Synergistetes'. Members of this relatively recently proposed phylum 'Synergistetes' are of interest because of their isolated phylogenetic position and their diverse habitats, e.g. from humans to oil wells. The genome of T. lienii Cas60314T is the fifth genome sequence (third completed) from this phylum to be published. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 1,999,646 bp long genome (including one plasmid) with its 1,914 pro-tein-coding and 59 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.",
keywords = "Anaerobic, Chemoorganotrophic, GEBA, Gram-negative, Marine oil well, Motile, Synergistaceae, Thermophilic",
author = "Markus G{\"o}ker and Elisabeth Saunders and Alla Lapidus and Matt Nolan and Susan Lucas and Nancy Hammon and Shweta Deshpande and Cheng, {Jan Fang} and Cliff Han and Roxanne Tapia and Goodwin, {Lynne A.} and Sam Pitluck and Konstantinos Liolios and Konstantinos Mavromatis and Ioanna Pagani and Natalia Ivanova and Natalia Mikhailova and Amrita Pati and Amy Chen and Krishna Palaniappan and Miriam Land and Chang, {Yun Juan} and Jeffries, {Cynthia D.} and Brambilla, {Evelyne Marie} and Manfred Rohde and Stefan Spring and Detter, {John C.} and Tanja Woyke and James Bristow and Eisen, {Jonathan A.} and Victor Markowitz and Philip Hugenholtz and Kyrpides, {Nikos C.} and Klenk, {Hans Peter}",
year = "2012",
month = "7",
day = "12",
doi = "10.4056/sigs.2726028",
language = "English",
volume = "6",
pages = "230--239",
journal = "Standards in Genomic Sciences",
issn = "1944-3277",
publisher = "Michigan State University",
number = "2",

}

Göker, M, Saunders, E, Lapidus, A, Nolan, M, Lucas, S, Hammon, N, Deshpande, S, Cheng, JF, Han, C, Tapia, R, Goodwin, LA, Pitluck, S, Liolios, K, Mavromatis, K, Pagani, I, Ivanova, N, Mikhailova, N, Pati, A, Chen, A, Palaniappan, K, Land, M, Chang, YJ, Jeffries, CD, Brambilla, EM, Rohde, M, Spring, S, Detter, JC, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC & Klenk, HP 2012, 'Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314T)', Standards in Genomic Sciences, том. 6, № 2, стр. 230-239. https://doi.org/10.4056/sigs.2726028

Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314T). / Göker, Markus; Saunders, Elisabeth; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan Fang; Han, Cliff; Tapia, Roxanne; Goodwin, Lynne A.; Pitluck, Sam; Liolios, Konstantinos; Mavromatis, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Chang, Yun Juan; Jeffries, Cynthia D.; Brambilla, Evelyne Marie; Rohde, Manfred; Spring, Stefan; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter.

В: Standards in Genomic Sciences, Том 6, № 2, 12.07.2012, стр. 230-239.

Результат исследований: Научные публикации в периодических изданияхстатья

TY - JOUR

T1 - Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314T)

AU - Göker, Markus

AU - Saunders, Elisabeth

AU - Lapidus, Alla

AU - Nolan, Matt

AU - Lucas, Susan

AU - Hammon, Nancy

AU - Deshpande, Shweta

AU - Cheng, Jan Fang

AU - Han, Cliff

AU - Tapia, Roxanne

AU - Goodwin, Lynne A.

AU - Pitluck, Sam

AU - Liolios, Konstantinos

AU - Mavromatis, Konstantinos

AU - Pagani, Ioanna

AU - Ivanova, Natalia

AU - Mikhailova, Natalia

AU - Pati, Amrita

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Land, Miriam

AU - Chang, Yun Juan

AU - Jeffries, Cynthia D.

AU - Brambilla, Evelyne Marie

AU - Rohde, Manfred

AU - Spring, Stefan

AU - Detter, John C.

AU - Woyke, Tanja

AU - Bristow, James

AU - Eisen, Jonathan A.

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

PY - 2012/7/12

Y1 - 2012/7/12

N2 - Thermovirga lienii Dahle and Birkeland 2006 is a member of the genus Thermovirga in the genomically moderately well characterized phylum 'Synergistetes'. Members of this relatively recently proposed phylum 'Synergistetes' are of interest because of their isolated phylogenetic position and their diverse habitats, e.g. from humans to oil wells. The genome of T. lienii Cas60314T is the fifth genome sequence (third completed) from this phylum to be published. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 1,999,646 bp long genome (including one plasmid) with its 1,914 pro-tein-coding and 59 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Thermovirga lienii Dahle and Birkeland 2006 is a member of the genus Thermovirga in the genomically moderately well characterized phylum 'Synergistetes'. Members of this relatively recently proposed phylum 'Synergistetes' are of interest because of their isolated phylogenetic position and their diverse habitats, e.g. from humans to oil wells. The genome of T. lienii Cas60314T is the fifth genome sequence (third completed) from this phylum to be published. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 1,999,646 bp long genome (including one plasmid) with its 1,914 pro-tein-coding and 59 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - Anaerobic

KW - Chemoorganotrophic

KW - GEBA

KW - Gram-negative

KW - Marine oil well

KW - Motile

KW - Synergistaceae

KW - Thermophilic

UR - http://www.scopus.com/inward/record.url?scp=84863568701&partnerID=8YFLogxK

U2 - 10.4056/sigs.2726028

DO - 10.4056/sigs.2726028

M3 - Article

AN - SCOPUS:84863568701

VL - 6

SP - 230

EP - 239

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

SN - 1944-3277

IS - 2

ER -