IonHammer: Homopolymer-Space Hamming Clustering for IonTorrent Read Error Correction

Vasily Ershov, Артем Тарасов, Alla Lapidus, Anton Korobeynikov

Research output

Abstract

We describe fast and accurate algorithm for IonTorrent read error correction capable of significantly reducing the number of sequencing errors over the wide range of data sets. IonHammer is implemented in C++ and is freely available as part of the SPAdes genome assembler package.

Original languageEnglish
Pages (from-to)124-127
Number of pages4
JournalJournal of Computational Biology
Volume26
Issue number2
Early online date16 Oct 2018
DOIs
Publication statusPublished - 1 Feb 2019

Cite this

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title = "IonHammer: Homopolymer-Space Hamming Clustering for IonTorrent Read Error Correction",
abstract = "We describe fast and accurate algorithm for IonTorrent read error correction capable of significantly reducing the number of sequencing errors over the wide range of data sets. IonHammer is implemented in C++ and is freely available as part of the SPAdes genome assembler package.",
keywords = "homopolymer-space clustering, IonTorrent, read error correction",
author = "Vasily Ershov and Артем Тарасов and Alla Lapidus and Anton Korobeynikov",
year = "2019",
month = "2",
day = "1",
doi = "10.1089/cmb.2018.0152",
language = "Английский",
volume = "26",
pages = "124--127",
journal = "Journal of Computational Biology",
issn = "1066-5277",
publisher = "Mary Ann Liebert Inc.",
number = "2",

}

IonHammer : Homopolymer-Space Hamming Clustering for IonTorrent Read Error Correction. / Ershov, Vasily; Тарасов, Артем; Lapidus, Alla; Korobeynikov, Anton.

In: Journal of Computational Biology, Vol. 26, No. 2, 01.02.2019, p. 124-127.

Research output

TY - JOUR

T1 - IonHammer

T2 - Homopolymer-Space Hamming Clustering for IonTorrent Read Error Correction

AU - Ershov, Vasily

AU - Тарасов, Артем

AU - Lapidus, Alla

AU - Korobeynikov, Anton

PY - 2019/2/1

Y1 - 2019/2/1

N2 - We describe fast and accurate algorithm for IonTorrent read error correction capable of significantly reducing the number of sequencing errors over the wide range of data sets. IonHammer is implemented in C++ and is freely available as part of the SPAdes genome assembler package.

AB - We describe fast and accurate algorithm for IonTorrent read error correction capable of significantly reducing the number of sequencing errors over the wide range of data sets. IonHammer is implemented in C++ and is freely available as part of the SPAdes genome assembler package.

KW - homopolymer-space clustering

KW - IonTorrent

KW - read error correction

U2 - 10.1089/cmb.2018.0152

DO - 10.1089/cmb.2018.0152

M3 - статья

VL - 26

SP - 124

EP - 127

JO - Journal of Computational Biology

JF - Journal of Computational Biology

SN - 1066-5277

IS - 2

ER -