The carbon cycle process of coastal ecosystems is extremely complex subjected to the coupling effects of hydrodynamics from land and sea. To investigate the distribution and biogeochemistry of organic carbon in estuaries area, particulate organic carbon (POC) and dissolved organic carbon (DOC) in water and total organic carbon (TOC) in surface sediments were measured over four tidal cycles at Sanjiagang (121.8°E, 31.2°N) in the Yangtze River estuary (YRE) from November 2022 to February 2023. Our results showed that the concentration of POC and DOC in water was positively correlated during the autumn and winter. Additionally, the significant positive correlation between tidal elevation and TOC concentrations indicated that organic carbon accumulation to estuarine areas was greatly influenced by tides. According to the principal component analysis (PCA) and stepwise multiple regression, the tidal dynamics and physicochemical properties of water, including salinity, dissolved oxygen (DO), temperature, turbidity, and pH, showed significant correlations to organic carbon. DOC and TOC concentrations were significantly higher in autumn than in winter. Due to the tidal asymmetry in the YRE, the POC and DOC concentrations during ebb tides were higher than those during flood tides. Furthermore, the influence of hydrometeorological conditions such as monthly precipitation and average temperature on the accumulation of organic carbon cannot be ignored in coastal areas. In addition, the grey correlation analysis revealed that strong relevance between the development of the processing manufacturing industry and the TOC in sediments at Site SJG. The socio-economic development and anthropogenic activities along the YRE interfered with the biogeochemical cycle of organic carbon through the massive discharge of wastewater and CO2. © 2024 Elsevier B.V., All rights reserved.