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    Алла Львовна Лапидус

Draft Genome Sequence of Mn(II)-Oxidizing Bacterium Oxalobacteraceae sp. Strain AB_14

Bushman, T. J., Akob, D. M., Bohu, T., Beyer, A., Woyke, T., Shapiro, N., Lapidus, A., Klenk, H-P. & Kuesel, K., 24 Oct 2019, In : Microbiology resource announcements. 8, 43, e01024-19.

Research output

Extending rnaSPAdes functionality for hybrid transcriptome assembly

Prjibelski, A., Bushmanova, E., Giordano, D., Mikheenko, A., Puglia, G., Antipov, D., Viatale, D. & Lapidus, A., 8 Nov 2019, In : BMC Bioinformatics. 20, S17, 2 p., O9.

Research output

1 Citation (Scopus)

Plasmid detection and assembly in genomic and metagenomic datasets

Antipov, D., Raiko, M., Lapidus, A. & Pevzner, P. A., 1 Jan 2019, In : Genome Research. 29, 6, p. 961-968 8 p.

Research output

Metagenomics
Plasmids
Datasets
Radar
Microbial Drug Resistance
3 Citations (Scopus)

RnaSPAdes: A de novo transcriptome assembler and its application to RNA-Seq data

Bushmanova, E., Antipov, D., Lapidus, A. & Prjibelski, A. D., 18 Sep 2019, In : GigaScience. 8, 9, giz100.

Research output

Open Access
RNA
Transcriptome
Genes
RNA Sequence Analysis
Genome

Sequence Analysis

Пржибельский, А. Д., Коробейников, А. И. & Лапидус, А. Л., 2019, Encyclopedia of Bioinformatics and Computational Biology: Reference Module in Life Sciences. Elsevier, Vol. 3. p. 292-322

Research output

2018
2 Citations (Scopus)

Autoprobiotics as an Approach for Restoration of Personalised Microbiota

Суворов, А. Н., Карасева, А. Б., Котылева, М. П., Кондратенко, Ю. Д., Лавренова, Н., Коробейников, А. И., Козырев, П. А., Крамская, Т. А., Леонтьева, Г., Кудрявцев, И. В., Guo, D., Лапидус, А. Л. & Ермоленко, Е. И., 12 Sep 2018, In : Frontiers in Microbiology. 9, 1869.

Research output

Open Access
2 Citations (Scopus)

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea (Nature Biotechnology (2017) 35 (725-731) DOI: 10.1038/nbt.3893)

Bowers, R. M., Kyrpides, N. C., Stepanauskas, R., Harmon-Smith, M., Doud, D., Reddy, T. B. K., Schulz, F., Jarett, J., Rivers, A. R., Eloe-Fadrosh, E. A., Tringe, S. G., Ivanova, N. N., Copeland, A., Clum, A., Becraft, E. D., Malmstrom, R. R., Birren, B., Podar, M., Bork, P., Weinstock, G. M. & 30 others, Garrity, G. M., Dodsworth, J. A., Yooseph, S., Sutton, G., Glöckner, F. O., Gilbert, J. A., Nelson, W. C., Hallam, S. J., Jungbluth, S. P., Ettema, T. J. G., Tighe, S., Konstantinidis, K. T., Liu, W. T., Baker, B. J., Rattei, T., Eisen, J. A., Hedlund, B., Mcmahon, K. D., Fierer, N., Knight, R., Finn, R., Cochrane, G., Karsch-Mizrachi, I., Tyson, G. W., Rinke, C., Lapidus, A., Meyer, F., Yilmaz, P., Parks, D. H. & Eren, A. M., 6 Jul 2018, In : Nature Biotechnology. 36, 7, 1 p.

Research output

Metagenome
HTML
Archaea
Biotechnology
Bacteria
2017
105 Citations (Scopus)

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.

de Vries, R. P., Riley, R., Wiebenga, A., Aguilar-Osorio, G., Amillis, S., Uchima, C. A., Anderluh, G., Asadollahi, M., Askin, M., Barry, K., Battaglia, E., Bayram, O., Benocci, T., Braus-Stromeyer, S. A., Caldana, C., Cánovas, D., Cerqueira, G. C., Chen, F., Chen, W., Choi, C. & 97 others, Clum, A., dos Santos, R. A. C., de Lima Damásio, A. R., Diallinas, G., Emri, T., Fekete, E., Flipphi, M., Freyberg, S., Gallo, A., Gournas, C., Habgood, R., Hainaut, M., Harispe, M. L., Henrissat, B., Hildén, K. S., Hope, R., Hossain, A., Karabika, E., Karaffa, L., Karányi, Z., Kra evec, N., Kuo, A., Kusch, H., LaButti, K., Lagendijk, E. L., Lapidus, A., Levasseur, A., Lindquist, E., Lipzen, A., Logrieco, A. F., MacCabe, A., Mäkelä, M. R., Malavazi, I., Melin, P., Meyer, V., Mielnichuk, N., Miskei, M., Molnár, A. P., Mulé, G., Ngan, C. Y., Orejas, M., Orosz, E., Ouedraogo, J. P., Overkamp, K. M., Park, H-S., Perrone, G., Piumi, F., Punt, P. J., Ram, A. F. J., Ramón, A., Rauscher, S., Record, E., Riaño-Pachón, D. M., Robert, V., Röhrig, J., Ruller, R., Salamov, A., Salih, N. S., Samson, R. A., Sándor, E., Sanguinetti, M., Schütze, T., Sep i, K., Shelest, E., Sherlock, G., Sophianopoulou, V., Squina, F. M., Sun, H., Susca, A., Todd, R. B., Tsang, A., Unkles, S. E., van de Wiele, N., van Rossen-Uffink, D., de Castro Oliveira, J. V., Vesth, T. C., Visser, J., Yu, J-H., Zhou, M., Andersen, M. R., Archer, D. B., Baker, S. E., Benoit, I., Brakhage, A. A., Braus, G. H., Fischer, R., Frisvad, J. C., Goldman, G. H., Houbraken, J., Oakley, B., Pócsi, I., Scazzocchio, C., Seiboth, B., vanKuyk, P. A., Wortman, J., Dyer, P. S. & Grigoriev, I. V., 14 Feb 2017, In : Genome Biology. 18, 1, PMID: 28196534.

Research output

Open Access
Biodiversity
Aspergillus
Genomics
genomics
genome
2 Citations (Scopus)

Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds

Jiao, J. Y., Carro, L., Liu, L., Gao, X. Y., Zhang, X. T., Hozzein, W. N., Lapidus, A., Huntemann, M., Reddy, T. B. K., Varghese, N., Hadjithomas, M., Ivanova, N. N., Göker, M., Pillay, M., Eisen, J. A., Woyke, T., Klenk, H. P., Kyrpides, N. C. & Li, W. J., 3 Feb 2017, In : Standards in Genomic Sciences. 12, 1, 21.

Research output

Open Access
Genome
Multigene Family
Anti-Bacterial Agents
rRNA Genes
Pristinamycin

Complete mitochondrial genomes of Baikal oilfishes (Perciformes Cottoidei), earth’s deepest-swimming freshwater fishes

Sandel, M. W., Aguilar, A., Fast, K., O’Brien, S., Lapidus, A., Allison, D. B., Teterina, V. & Kirilchik, S., 20 Dec 2017, In : Mitochondrial DNA. 2, 2, p. 773-775 3 p.

Research output

Open Access
Perciformes
Mitochondrial Genome
Lakes
Electron Transport
Fresh Water
5 Citations (Scopus)

Draft genome sequence of Dethiobacter alkaliphilus strain AHT1T, a gram-positive sulfidogenic polyextremophile

Melton, E. D., Sorokin, D. Y., Overmars, L., Lapidus, A. L., Pillay, M., Ivanova, N., del Rio, T. G., Kyrpides, N. C., Woyke, T. & Muyzer, G., 21 Sep 2017, In : Standards in Genomic Sciences. 12, 1, 57.

Research output

Open Access
Mongolia
Genome
Environmental Biodegradation
Base Composition
Gram-Positive Bacteria

Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica

Choi, D. H., Jang, G. I. I., Lapidus, A., Copeland, A., Reddy, T. B. K., Mukherjee, S., Huntemann, M., Varghese, N., Ivanova, N., Pillay, M., Tindall, B. J., Göker, M., Woyke, T., Klenk, H. P., Kyrpides, N. C. & Cho, B. C., 30 Oct 2017, In : Standards in Genomic Sciences. 12, 1, 65.

Research output

Open Access
Chenopodiaceae
Rhizosphere
Genome
Alteromonadaceae
Encyclopedias
142 Citations (Scopus)

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

The Genome Standards Consortium, 8 Aug 2017, In : Nature Biotechnology. 35, 8, p. 725-731 7 p., PMID: 28787424.

Research output

Open Access
Metagenome
Archaea
Bacteria
Genes
Genome
2 Citations (Scopus)

Permanent draft genome sequence of Desulfurococcus amylolyticus strain Z-533T, a peptide and starch degrader isolated from thermal springs in the Kamchatka Peninsula and Kunashir Island, Russia

Susanti, D., Johnson, E. F., Lapidus, A., Han, J., Reddy, T. B. K., Mukherjee, S., Pillay, M., Perevalova, A. A., Ivanova, N. N., Woyke, T., Kyrpides, N. C. & Mukhopadhyay, B., 1 Apr 2017, In : Genome Announcements. 5, 15, e0007817.

Research output

Open Access
Desulfurococcaceae
Russia
Islands
Starch
Hydrogen
2016
103 Citations (Scopus)

Comparative genomics of biotechnologically important yeasts

Riley, R., Haridas, S., Wolfe, K. H., Lopes, M. R., Hittinger, C. T., Göker, M., Salamov, A. A., Wisecaver, J. H., Long, T. M., Calvey, C. H., Aerts, A. L., Barry, K. W., Choi, C., Clum, A., Coughlan, A. Y., Deshpande, S., Douglass, A. P., Hanson, S. J., Klenk, H-P., Labutti, K. M. & 19 others, Lapidus, A., Lindquist, E. A., Lipzen, A. M., Meier-Kolthoff, J. P., Ohm, R. A., Otillar, R. P., Pangilinan, J. L., Peng, Y., Rokas, A., Rosa, C. A., Scheuner, C., Sibirny, A. A., Slot, J. C., Benjamin, S. J., Sun, H., Kurtzman, C. P., Blackwell, M., Grigoriev, I. V. & Jeffries, T. W., 30 Aug 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, p. 9882-9887 6 p.

Research output

Ascomycota
Genomics
Yeasts
Genetic Code
Synteny
9 Citations (Scopus)

Comparing polysaccharide decomposition between the type strains Gramellaechinicola KMM 6050(T) (DSM 19838(T)) and Gramella portivictoriae UST040801-001(T) (DSM 23547(T)), and emended description of Gramella echinicolaNedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriaeLau et al. 2005.

Panschin, I., Huang, S., Meier-Kolthoff, JP., Tindall, BJ., Rohde, M., Verbarg, S., Lapidus, A., Han, J., Trong, S., Haynes, M., Reddy, TB., Huntemann, M., Pati, A., Ivanova, NN., Mavromatis, K., Markowitz, V., Woyke, T., Göker, M., Klenk, HP., Kyrpides, NC. & 1 others, Hahnke, RL., 2016, In : Standards in Genomic Sciences.

Research output

3 Citations (Scopus)

Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds

Hwang, C., Copeland, A., Lucas, S., Лапидус, А., Barry, K., Detter, J. C., Glavina Del Rio, T., Hammon, N., Israni, S., Dalin, E., Tice, H., Pitluck, S., Chertkov, O., Brettin, T., Bruce, D., Han, C., Schmutz, J., Larimer, F., Land, M. L., Hauser, L. & 5 others, Kyrpides, N., Ye, Q., Zhou, J., Richardson, P. & Fields, M. W., 2016, In : Genome Announcements. 4, 6

Research output

Metals
Genome
Bacteria
borax
Firmicutes
7 Citations (Scopus)

Complete genome sequence of Desulfurivibrio alkaliphilus strain AHT2(T), a haloalkaliphilic sulfidogen from Egyptian hypersaline alkaline lakes

Melton, E. D., Sorokin, D. Y., Overmars, L., Chertkov, O., Clum, A., Pillay, M., Ivanova, N., Shapiro, N., Kyrpides, N. C., Woyke, T., Lapidus, A. L. & Muyzer, G., 2016, In : Standards in Genomic Sciences. 11, 9 p.

Research output

Lakes
Deltaproteobacteria
Genome
Biotechnology
Industry
14 Citations (Scopus)

Complete genome sequence of Methanospirillum hungatei type strain JF1

Gunsalus, R. P., Cook, L. E., Crable, B., Rohlin, L., McDonald, E., Mouttaki, H., Sieber, J. R., Poweleit, N., Zhou, H., Lapidus, A. L., Daligault, H. E., Land, M., Gilna, P., Ivanova, N., Kyrpides, N., Culley, D. E. & McInerney, M. J., 6 Jan 2016, In : Standards in Genomic Sciences. 11, 1, 2.

Research output

Open Access
Methanospirillum
formic acid
Genome
Methanomicrobiales
Hydrogen
5 Citations (Scopus)

Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34

Anderson, I. J., DasSarma, P., Lucas, S., Copeland, A., Lapidus, A., Del Rio, T. G., Tice, H., Dalin, E., Bruce, D. C., Goodwin, L., Pitluck, S., Sims, D., Brettin, T. S., Detter, J. C., Han, C. S., Larimer, F., Hauser, L., Land, M., Richardson, P., Cavicchioli, R. & 3 others, DasSarma, S., Woese, C. R. & Kyrpides, N. C., 10 Sep 2016, In : Standards in Genomic Sciences. 11, 1, p. 70

Research output

Halorubrum
Genome
Halobacteriales
Euryarchaeota
Archaea
3 Citations (Scopus)

Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477(T))

Kappler, U., Davenport, K., Beatson, S., Lapidus, A., Pan, C., Han, C., Montero-Calasanz, M. D. C., Land, M., Hauser, L., Rohde, M., Göker, M., Ivanova, N., Woyke, T., Klenk, H-P. & Kyrpides, N. C., 2016, In : Standards in Genomic Sciences. 11, p. 38

Research output

Thiosulfates
Proteobacteria
Sulfides
Lakes
Piscirickettsiaceae
17 Citations (Scopus)

Fungi contribute critical but spatially varying roles in nitrogen and carbon cycling in acid mine drainage

Mosier, A. C., Miller, C. S., Frischkorn, K. R., Ohm, R. A., Li, Z., LaButti, K., Lapidus, A., Lipzen, A., Chen, C., Johnson, J., Lindquist, E. A., Pan, C., Hettich, R. L., Grigoriev, I. V., Singer, S. W. & Banfield, J. F., 3 Mar 2016, In : Frontiers in Microbiology. 7, 18 p.

Research output

Biofilms
Drainage
Fungi
Nitrogen
Carbon
1 Citation (Scopus)

High-quality draft genome sequence of Flavobacterium suncheonense GH29-5(T) (DSM 17707(T)) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5(T)

Tashkandy, N., Sabban, S., Fakieh, M., Meier-Kolthoff, J. P., Huang, S., Tindall, B. J., Rohde, M., Baeshen, M. N., Baeshen, N. A., Lapidus, A., Copeland, A., Pillay, M., Reddy, T. B. K., Huntemann, M., Pati, A., Ivanova, N., Markowitz, V., Woyke, T., Goeker, M., Klenk, H-P. & 2 others, Kyrpides, N. C. & Hahnke, R. L., 2016, In : Standards in Genomic Sciences. 11, 10 p.

Research output

aprepitant
Flavobacterium
Republic of Korea
Soil
Carbohydrates

High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775(T), a plant pathogen of French bean pods

Aizenberg-Gershtein, Y., Izhaki, I., Lapidus, A., Copeland, A., Reddy, T. B. K., Huntemann, M., Pillay, M., Markowitz, V., Goeker, M., Woyke, T., Klenk, H-P., Kyrpides, N. C. & Halpern, M., 2016, In : Standards in Genomic Sciences. 11, 7 p.

Research output

Phaseolus
Pseudomonas
Microbial Genome
Genome
Encyclopedias
1 Citation (Scopus)

Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland

Susanti, D., Johnson, E. F., Lapidus, A., Han, J., Reddy, T. B. K., Pilay, M., Ivanova, N. N., Markowitz, V. M., Woyke, T., Kyrpides, N. C. & Mukhopadhyay, B., 2016, In : Standards in Genomic Sciences. 11, 3, 3.

Research output

Open Access
Desulfurococcaceae
Hot Springs
Iceland
Sulfur
Genome
108 Citations (Scopus)

PlasmidSPAdes: Assembling plasmids from whole genome sequencing data

Antipov, D., Hartwick, N., Shen, M., Raiko, M., Lapidus, A. & Pevzner, P. A., 15 Nov 2016, In : Bioinformatics. 32, 22, p. 3380-3387 8 p.

Research output

Sequencing
Genome
Plasmids
Genes
Software Tools
20 Citations (Scopus)

RnaQUAST: A quality assessment tool for de novo transcriptome assemblies

Bushmanova, E., Antipov, D., Lapidus, A., Suvorov, V. & Prjibelski, A. D., 15 Jul 2016, In : Bioinformatics. 32, 14, p. 2210-2212 3 p.

Research output

Quality Assessment
RNA
Transcriptome
Python
Genes
50 Citations (Scopus)

Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles

Castanera, R. L., López-Varas, L., Borgognone, A., Labutti, K., Lapidus, A., Schmutz, J., Grimwood, J., Pérez, G. M., Pisabarro, A. G., Grigoriev, I. V., Stajich, J. E. & Ram rez, L. A., 1 Jun 2016, In : PLoS Genetics. 12, 6, e1006108.

Research output

Fungal Genome
DNA Transposable Elements
transposons
genome
Genome
2015
6 Citations (Scopus)

Complete Genome Sequence of Anaeromyxobacter sp. Fw109-5, an Anaerobic, Metal-Reducing Bacterium Isolated from a Contaminated Subsurface Environment

Hwang, C., Copeland, A., Lucas, S., Lapidus, A., Barry, K., Glavina Del Rio, T., Dalin, E., Tice, H., Pitluck, S., Sims, D., Brettin, T., Bruce, D. C., Detter, J. C., Han, C. S., Schmutz, J., Larimer, F. W., Land, M. L., Hauser, L. J., Kyrpides, N., Lykidis, A. & 5 others, Richardson, P., Belieav, A., Sanford, R. A., Löeffler, F. E. & Fields, M. W., 2015, In : Genome Announcements. 3, 1

Research output

Uranyl Nitrate
Metals
Genome
Bacteria
Environmental Biodegradation
6 Citations (Scopus)

Complete genome sequence of the phenanthrene-degrading soil bacterium Delftia acidovorans Cs1-4

Shetty, AR., de, G. V., Obi, CC., Lucas, S., Lapidus, A., Cheng, JF., Goodwin, LA., Pitluck, S., Peters, L., Mikhailova, N., Teshima, H., Han, C., Tapia, R., Land, M., Hauser, LJ., Kyrpides, N., Ivanova, N., Pagani, I., Chain, PS., Denef, VJ. & 2 others, Woyke, T. & Hickey, WJ., 2015, In : Standards in Genomic Sciences. 10:55, p. 1-10

Research output

5 Citations (Scopus)
Prochlorothrix
Prochlorothrix hollandica
Metagenome
Cyanobacteria
cyanobacterium
1 Citation (Scopus)

Correction: The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry [PLoS Genet, 11(12), (2015)]

de Wit, P. J. G. M., van der Burgt, A., Ökmen, B., Stergiopoulos, I., Abd-Elsalam, K. A., Aerts, A. L., Bahkali, A. H., Beenen, H. G., Chettri, P., Cox, M. P., Datema, E., de Vries, R. P., Dhillon, B., Ganley, A. R., Griffiths, S. A., Guo, Y., Hamelin, R. C., Henrissat, B., Shahjahan Kabir, M., Karimi Jashni, M. & 19 others, Kema, G., Klaubauf, S., Lapidus, A., Levasseur, A., Lindquist, E., Mehrabi, R., Ohm, R. A., Owen, T. J., Salamov, A., Schwelm, A., Schijlen, E., Sun, H., van den Burg, H. A., van Ham, R. C. H. J., Zhang, S., Goodwin, S. B., Grigoriev, I. V., Collemare, J. & Bradshaw, R. E., 22 Dec 2015, In : PLoS Genetics. 11, 12, e1005775.

Research output

4 Citations (Scopus)

Draft genome sequence of Halomonas lutea strain YIM 91125<sup>T</sup> (DSM 23508<sup>T</sup>) isolated from the alkaline Lake Ebinur in Northwest China

Gao, X-Y., Zhi, X-Y., Li, H-W., Zhou, Y., Lapidus, A., Han, J., Haynes, M., Lobos, E., Huntemann, M., Pati, A., Ivanova, N. N., Mavromatis, K., Tindall, B. J., Markowitz, V., Woyke, T., Klenk, H-P., Kyrpides, N. C. & Li, W-J., 2015, In : Standards in Genomic Sciences. FEBRUARY2015, 8 p.

Research output

Halomonas
Lakes
China
Genome
Halomonadaceae
12 Citations (Scopus)

Genome sequence of Phaeobacter caeruleus type strain (DSM 24564T), a surface-associated member of the marine Roseobacter clade

Beyersmann, P. G., Chertkov, O., Petersen, J., Fiebig, A., Chen, A., Pati, A., Ivanova, N., Lapidus, A., Goodwin, L. A., Chain, P., Detter, J. C., Rohde, M., Gronow, S., Kyrpides, N. C., Woyke, T., Simon, M., Göker, M., Klenk, H. P. & Brinkhoff, T., 30 Oct 2015, In : Standards in Genomic Sciences. 8, 3, p. 403-419 17 p.

Research output

Roseobacter
Acyl-Butyrolactones
Genome
Alphaproteobacteria
Quorum Sensing
11 Citations (Scopus)

Genome Sequence of the Atypical Symbiotic Frankia R43 Strain, a Nitrogen-Fixing and Hydrogen-Producing Actinobacterium

Pujic, P., Bolotin, A., Fournier, P., Sorokin, A., Lapidus, A., Richau, K. H., Briolay, J., Mebarki, F., Normand, P. & Sellstedt, A., 2015, In : Genome Announcements. 3, 6

Research output

Elaeagnaceae
Frankia
Actinobacteria
Genomics
Hydrogen
3 Citations (Scopus)

Genome sequence of the Thermotoga thermarum type strain (LA3T) from an African solfataric spring

Göker, M., Spring, S., Scheuner, C., Anderson, I., Zeytun, A., Nolan, M., Lucas, S., Tice, H., Glavina Del Rio, T., Cheng, J-F., Han, C., Tapia, R., Goodwin, L. A., Pitluck, S., Liolios, K., Mavromatis, K., Pagani, I., Ivanova, N., Mikhailova, N., Pati, A. & 16 others, Chen, A., Palaniappan, K., Land, M., Hauser, L., Chang, Y-J., Jeffries, C. D., Rohde, M., Detter, J. C., Woyke, T., Bristow, J., Eisen, J. A., Markowitz, V., Hugenholtz, P., Kyrpides, N. C., Klenk, H-P. & Lapidus, A., 2015, In : Standards in Genomic Sciences. p. None

Research output

Genome
Oil and Gas Fields
rRNA Genes
Sulfur
Publications
4 Citations (Scopus)

High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1<sup>T</sup>(DSM 17521<sup>T</sup>) isolated from muddy waters of a drainage system in Chandigarh, India

Mukherjee, S., Lapidus, A., Shapiro, N., Cheng, J-F., Han, J., Reddy, T. B. K., Huntemann, M., Ivanova, N., Mikhailova, N., Chen, A., Palaniappan, K., Spring, S., Göker, M., Markowitz, V., Woyke, T., Tindall, B. J., Klenk, H-P., Kyrpides, N. C. & Pati, A., 2015, In : Standards in Genomic Sciences. FEBRUARY2015, 9 p.

Research output

Cytophagaceae
Sequence Analysis
Drainage
India
Genome
1 Citation (Scopus)

High quality draft genome sequence of Bacteroides barnesiae type strain BL2<sup>T</sup>(DSM 18169<sup>T</sup>) from chicken caecum

Sakamoto, M., Lapidus, A. L., Han, J., Trong, S., Haynes, M., Reddy, T. B. K., Mikhailova, N., Huntemann, M., Pati, A., Ivanova, N. N., Pukall, R., Markowitz, V. M., Woyke, T., Klenk, H-P., Kyrpides, N. C. & Ohkuma, M., 2015, In : Standards in Genomic Sciences. AUGUST2015, 6 p.

Research output

Bacteroidaceae
Microbial Genome
Encyclopedias
Bacteroides
Microbiota
1 Citation (Scopus)

High quality draft genome sequence of Brachymonas chironomi AIMA4T (DSM 19884T) isolated from a Chironomus sp. egg mass

Laviad, S., Lapidus, A., Han, J., Haynes, M., Reddy, T. B. K., Huntemann, M., Pati, A., Ivanova, N. N., Mavromatis, K., Lang, E., Rohde, M., Markowitz, V., Woyke, T., Klenk, H-P., Kyrpides, N. C. & Halpern, M., 2015, In : Standards in Genomic Sciences. 10, 29, 7 p.

Research output

Chironomidae
Ovum
Comamonadaceae
Microbial Genome
Genome
1 Citation (Scopus)

High quality draft genome sequence of Corynebacterium ulceribovis type strain IMMIB-L1395<sup>T</sup> (DSM 45146<sup>T</sup>)

Yassin, A. F., Lapidus, A., Han, J., Reddy, T. B. K., Huntemann, M., Pati, A., Ivanova, N., Markowitz, V., Woyke, T., Klenk, H-P. & Kyrpides, N. C., 2015, In : Standards in Genomic Sciences. AUGUST2015, 20 p.

Research output

Corynebacterium
Microbial Genome
Genome
Encyclopedias
Animal Mammary Glands
9 Citations (Scopus)

High quality draft genome sequence of Flavobacterium rivuli type strain WB 3.3-2<sup>T</sup> (DSM 21788<sup>T</sup>), a valuable source of polysaccharide decomposing enzymes

Hahnke, R. L., Stackebrandt, E., Meier-Kolthoff, J. P., Tindall, B. J., Huang, S., Rohde, M., Lapidus, A., Han, J., Trong, S., Haynes, M., Reddy, T. B. K., Huntemann, M., Pati, A., Ivanova, N. N., Mavromatis, K., Markowitz, V., Woyke, T., Göker, M., Kyrpides, N. C. & Klenk, H-P., 2015, In : Standards in Genomic Sciences. JULY2015, 16 p.

Research output

Bacteroidetes
Polysaccharides
Genome
Enzymes
aprepitant
2 Citations (Scopus)

High-quality draft genome sequence of Gracilimonas tropica CL-CB462T (DSM 19535T), isolated from a Synechococcus culture

Choi, D. H., Ahn, C., Jang, G. I., Lapidus, A., Han, J., Reddy, T. B. K., Huntemann, M., Pati, A., Ivanova, N., Markowitz, V., Rohde, M., Tindall, B., G ker, M., Woyke, T., Klenk, H-P., Kyrpides, N. C. & Cho, B. C., 2015, In : Standards in Genomic Sciences. 1, p. None

Research output

Synechococcus
Seawater
Microbial Genome
Genome
Encyclopedias
4 Citations (Scopus)

High quality draft genome sequence of leucobacter chironomi strain MM2LB<sup>T</sup> (DSM 19883<sup>T</sup>) isolated from a chironomus sp. egg mass

Laviad, S., Lapidus, A., Copeland, A., Reddy, T. B. K., Huntemann, M., Pati, A., Ivanova, N. N., Markowitz, V. M., Pukall, R., Klenk, H-P., Woyke, T., Kyrpides, N. C. & Halpern, M., 2015, In : Standards in Genomic Sciences. MAY2015, 7 p.

Research output

Chironomidae
Ovum
Microbial Genome
Gram-Positive Rods
Genome
5 Citations (Scopus)

High quality draft genome sequence of Meganema perideroedes str. Gr1<sup>T</sup> and a proposal for its reclassification to the family Meganemaceae fam. nov

McIlroy, S. J., Lapidus, A., Thomsen, T. R., Han, J., Haynes, M., Lobos, E., Huntemann, M., Pati, A., Ivanova, N. N., Markowitz, V., Verbarg, S., Woyke, T., Klenk, H-P., Kyrpides, N. & Nielsen, P. H., 2015, In : Standards in Genomic Sciences. FEBRUARY2015, 8 p.

Research output

Genome
Sewage
Microbial Genome
Encyclopedias
Waste Water