1. 2022
  2. 2021
  3. Azobenzene/tetraethyl ammonium photochromic potassium channel blockers: Scope and limitations for design of para-substituted derivatives with specific absorption band maxima and thermal isomerization rate

    Strashkov, D. M., Mironov, V. N., Nikolaev, D. M., Panov, M. S., Linnik, S. A., Mereshchenko, A. S., Kochemirovsky, V. A., Vasin, A. V. & Ryazantsev, M. N., 6 Dec 2021, In: International Journal of Molecular Sciences. 22, 23, 13171.

    Research output: Contribution to journalArticlepeer-review

  4. Free Energy Computation for an Isomerizing Chromophore in a Molecular Cavity via the Average Solvent Electrostatic Configuration Model: Applications in Rhodopsin and Rhodopsin-Mimicking Systems

    Nikolaev, D. M., Manathunga, M., Orozco-Gonzalez, Y., Shtyrov, A. A., Guerrero Martinez, Y. O., Gozem, S., Ryazantsev, M. N., Coutinho, K., Canuto, S. & Olivucci, M., 11 Aug 2021, In: Journal of Chemical Theory and Computation. 17, 9, p. 5885-5895 11 p.

    Research output: Contribution to journalArticlepeer-review

  5. Photopharmacological compounds based on azobenzenes and azoheteroarenes: principles of molecular design, molecular modelling, and synthesis

    Ryazantsev, M. N., Strashkov, D. M., Nikolaev, D. M., Shtyrov, A. A. & Panov, M. S., Aug 2021, In: Russian Chemical Reviews. 90, 7, p. 868-893 26 p.

    Research output: Contribution to journalReview articlepeer-review

  6. Bioimpedance Spectroscopy: Basics and Applications

    Stupin, D. D., Kuzina, E. A., Abelit, A. A., Emelyanov, A. K., Nikolaev, D. M., Ryazantsev, M. N., Koniakhin, S. V. & Dubina, M. V., 14 Jun 2021, In: ACS Biomaterials Science and Engineering. 7, 6, p. 1962-1986 25 p.

    Research output: Contribution to journalReview articlepeer-review

  7. Simple models to study spectral properties of microbial and animal rhodopsins: Evaluation of the electrostatic effect of charged and polar residues on the first absorption band maxima

    Shtyrov, A. A., Nikolaev, D. M., Mironov, V. N., Vasin, A. V., Panov, M. S., Tveryanovich, Y. S. & Ryazantsev, M. N., 16 Mar 2021, In: International Journal of Molecular Sciences. 22, 6, p. 1-19 19 p., 3029.

    Research output: Contribution to journalArticlepeer-review

  8. Quantum Mechanical/Molecular Mechanical Simulations Model Retinal Dynamics during Membrane Activation of Rhodopsin

    Nhi Van, Doole, F. T., Nikolaev, D., Ryazantsev, M. N., Struts, A. & Brown, M. F., 12 Feb 2021, In: Biophysical Journal. 120, 3, p. 304A-304A 1 p.

    Research output: Contribution to journalMeeting Abstractpeer-review

  9. Free Energy Computation for an Isomerizing Chromophore in a Molecular Cavity via the Average Solvent Electrostatic Configuration Model. Application to Rhodopsin and Rhodopsin-mimicking Systems

    Николаев, Д. М., Manathunga, M., Orozco-Gonzalez, Y., Shtyrov, A. A., Martínez, Y. O. G., Gozem, S., Ryazantsev, M. N., Coutinho, K., Canuto, S. & Olivucci, M., 2021, In: Journal of Chemical Theory and Computation. 17, 9, p. 5885-5895

    Research output: Contribution to journalArticle

  10. 2020
  11. An assessment of water placement algorithms in quantum mechanics/molecular mechanics modeling: the case of rhodopsins' first spectral absorption band maxima

    Nikolaev, D. M., Shtyrov, A. A., Mereshchenko, A. S., Panov, M. S., Tveryanovich, Y. S. & Ryazantsev, M. N., 28 Aug 2020, In: Physical Chemistry Chemical Physics. 22, 32, p. 18114-18123 10 p.

    Research output: Contribution to journalArticlepeer-review

  12. 2019
  13. Quantum Mechanical and Molecular Mechanics Modeling of Membrane-Embedded Rhodopsins

    Ryazantsev, M. N., Nikolaev, D. M., Struts, A. V. & Brown, M. F., Oct 2019, In: Journal of Membrane Biology. 252, 4-5, p. 425-449 25 p.

    Research output: Contribution to journalReview articlepeer-review

ID: 105650266