Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis

McBride, M. J., Xie, G., Martens, E. C., Lapidus, A., Henrissat, B., Rhodes, R. G., Goltsman, E., Wang, W., Xu, J., Hunnicutt, D. W., Staroscik, A. M., Hoover, T. R., Cheng, Y. Q. & Stein, J. L., Nov 2009, In: Applied and Environmental Microbiology. 75, 21, p. 6864-6875 12 p.

Research output: Contribution to journal › Article › peer-review

Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria

Penn, K., Jenkins, C., Nett, M., Udwary, D. W., Gontang, E. A., McGlinchey, R. P., Foster, B., Lapidus, A., Podell, S., Allen, E. E., Moore, B. S. & Jensen, P. R., Oct 2009, In: ISME Journal. 3, 10, p. 1193-1203 11 p.

Research output: Contribution to journal › Article › peer-review

Complete genome sequence of Halogeometricum borinquense type strain (PR3^T)

Malfatti, S., Tindall, B. J., Schneider, S., Fähnrich, R., Lapidus, A., LaButtii, K., Copeland, A., Del Rio, T. G., Nolan, M., Chen, F., Lu-cas, S., Tice, H., Cheng, J. F., Bruce, D., Goodwin, L., Pitluck, S., An-derson, I., Pati, A., Mavromatis, K., Chen, A. & 10 others, Pa-laniappan, K., D'haeseleer, P., Göker, M., Bristow, J., Eisen, J. A., Markowitz, V., Hugenholtz, P., Kyrpides, N. C., Klenk, H. P. & Chain, P., 29 Sep 2009, In: Standards in Genomic Sciences. 1, 2, p. 150-158 9 p.

Research output: Contribution to journal › Article › peer-review

The genomic basis of trophic strategy in marine bacteria

Lauro, F. M., McDougald, D., Thomas, T., Williams, T. J., Egan, S., Rice, S., DeMaere, M. Z., Ting, L., Ertan, H., Johnson, J., Ferriera, S., Lapidus, A., Anderson, I., Kyrpides, N., Munkf, A. C., Detterg, C., Hang, C. S., Brown, M. V., Robb, F. T., Kjelleberg, S. & 1 others, Cavicchioli, R., 15 Sep 2009, In: Proceedings of the National Academy of Sciences of the United States of America. 106, 37, p. 15527-15533 7 p.

Research output: Contribution to journal › Article › peer-review

The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: The role of genome evolution in cold adaptation

Allen, M. A., Lauro, F. M., Williams, T. J., Burg, D., Siddiqui, K. S., De Francisci, D., Chong, K. W. Y., Pilak, O., Chew, H. H., De Maere, M. Z., Ting, L., Katrib, M., Ng, C., Sowers, K. R., Galperin, M. Y., Anderson, I. J., Dalin, E., Martinez, M., Lapidus, A., Hauser, L. & 3 others, Land, M., Thomas, T. & Cavicchioli, R., Sep 2009, In: ISME Journal. 3, 9, p. 1012-1035 24 p.

Research output: Contribution to journal › Article › peer-review

Frameshift detection in prokaryotic genomic sequences

Kislyuk, A., Lomsadze, A., Lapidus, A. L. & Borodovsky, M., Jul 2009, In: International Journal of Bioinformatics Research and Applications. 5, 4, p. 458-477 20 p.

Research output: Contribution to journal › Article › peer-review

Genomic characterization of methanomicrobiales reveals three classes of methanogens

Anderson, I., Ulrich, L. E., Lupa, B., Susanti, D., Porat, I., Hooper, S. D., Lykidis, A., Sieprawska-Lupa, M., Dharmarajan, L., Goltsman, E., Lapidus, A., Saunders, E., Han, C., Land, M., Lucas, S., Mukhopadhyay, B., Whitman, W. B., Woese, C., Bristow, J. & Kyrpides, N., 4 Jun 2009, In: PLoS ONE. 4, 6, e5797.

Research output: Contribution to journal › Article › peer-review

Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus IIB provides insights into its ecophysiological and evolutionary adaptations

Barabote, R. D., Xie, G., Leu, D. H., Normand, P., Necsulea, A., Daubin, V., Médigue, C., Adney, W. S., Xin, C. X., Lapidus, A., Parales, R. E., Detter, C., Pujic, P., Bruce, D., Lavire, C., Challacombe, J. F., Brettin, T. S. & Berry, A. M., Jun 2009, In: Genome Research. 19, 6, p. 1033-1042 10 p.

Research output: Contribution to journal › Article › peer-review

Genomic analysis of "Elusimicrobium minutum" the first cultivated representative of the phylum "Elusimicrobia" (formerly termite group 1)

Herlemann, D. P. R., Geissinger, O., Ikeda-Ohtsubo, W., Kunin, V., Sun, H., Lapidus, A., Hugenholtz, P. & Brune, A., May 2009, In: Applied and Environmental Microbiology. 75, 9, p. 2841-2849 9 p.

Research output: Contribution to journal › Article › peer-review