Научная лаборатория биомолекулярного ЯМР

Research Output 1989 2019

Open Access

Flexible surface model for lipid-protein interactions

Eitel, A. R., Fried, S. D. E., Perera, S. M. D. C., Weerasinghe, N., Norris, C. E., Struts, A. V. & Brown, M. F., 2019.

Research output

G-Protein-Coupled Receptor Activation Mediated by Internal Hydration

Fried, S. D. E., Eitel, A. R., Weerasinghe, N., Norris, C. E., Somers, J. D., Fitzwater, G. I., Pitman, M. C., Struts, A. V., Perera, S. M. D. C. & Brown, M. F., 15 Feb 2019, In : Biophysical Journal. 116, 3, p. 207A-207A 1 p.

Research output

Histone tails in nucleosome: fuzzy interaction with DNA

Rabdano, S., Shannon, M., Izmailov, S., Gonzalez Salguero, N., Zandian, M., Poirier, M., Skrynnikov, N. & Jaroniec, C., 1 Jul 2019, In : European Biophysics Journal. 48, Suppl 1, p. 48

Research output

4 Citations (Scopus)

Luminescent Complexes of the Trinuclear Silver(I) and Copper(I) Pyrazolates Supported with Bis(diphenylphosphino)methane

Titov, A. A., Filippov, O. A., Smol'yakov, A. F., Godovikov, I. A., Shakirova, J. R., Tunik, S. P., Podkorytov, I. S. & Shubina, E. S., 1 Jul 2019, In : Inorganic Chemistry. 58, 13, p. 8645-8656 12 p.

Research output

5 Citations (Scopus)
Open Access

Multiplet-Matched Filtering of Rh-103 Signal Using Information Contained in P-31 Spectrum of AAXX P-31-Rh-103 Spin System

Podkorytov, I. S., Cherkasova, T. G., Kayfadzhyan, E. A. & Varshavsky, Y. S., Apr 2019, In : Applied Magnetic Resonance. 50, 4, p. 563-568

Research output

fine structure
rhodium
induction
signal to noise ratios
decay

NMR spectroscopic study of orientational order in imidazolium-based ionic liquid crystals

Dai, J., Majhi, D., Kharkov, B. B. & Dvinskikh, S. V., Oct 2019, In : Crystals. 9, 10, 495.

Research output

Open Access
Ionic Liquids
Liquid Crystals
ionic crystals
Ionic liquids
Liquid crystals
1 Citation (Scopus)
Open Access
Ionic Liquids
Liquid Crystals
ionic crystals
Ionic liquids
Liquid crystals

Peptide-protein conjugation in the context of targeted therapy: modeling and experiment

Rogacheva, O., Luzik, D., Indeykina, M., Kononikhin, A. & Skrynnikov, N., Jul 2019, In : FEBS Open Bio. 9, p. 212-212 1 p.

Research output

1 Citation (Scopus)

Quantum Mechanical and Molecular Mechanics Modeling of Membrane-Embedded Rhodopsins

Ryazantsev, M. N., Nikolaev, D. M., Struts, A. V. & Brown, M. F., Oct 2019, In : Journal of Membrane Biology. 252, 4-5, p. 425-449 25 p.

Research output

Rhodopsin
Mechanics
Membranes
Membrane Proteins
Technology

Quasielastic and elastic neutron scattering of membrane proteins

Perera, S. M. D. C., Chawla, U., Shrestha, U., Bhowmik, D., Struts, A. V., Qian, S., Chu, X-Q. & Brown, M. F., 2019.

Research output

Retinal Flipping During Rhodopsin Activation Revealed by Solid State H-2 NMR and QM/MM Simulations

Struts, A. V., Ryazantsev, M. N., Xu, X., Molugu, T. R., Perera, S. M. D. C., Guruge, C., Faylough, S., Nascimento, C. L., Nesnas, N. & Brown, M. F., 15 Feb 2019, In : Biophysical Journal. 116, 3, p. 204A-204A 1 p.

Research output

Rhodopsin Activation in Lipid Membranes Based on Solid-State NMR Spectroscopy

Perera, S. M. D. C., Xu, X., Molugu, T. R., Struts, A. V. & Brown, M. F., 27 Nov 2019, (Accepted/In press) Encyclopedia of Biophysics.

Research outputpeer-review

Sponge Model of G-Protein Binding and Unbinding in Membranes

Eitel, A. R., Fried, S. D. E., Perera, S. M. D. C., Chawla, U., Weerasinghe, N., Norris, C. E., Struts, A. V. & Brown, M. F., 15 Feb 2019, In : Biophysical Journal. 116, 3, p. 176A-176A 1 p.

Research output

Structural and dynamic origins of ESR lineshapes in spin-labeled GB1 domain: the insights from spin dynamics simulations based on long MD trajectories

Измайлов, С. А., Рабдано, С. О., Hasanbasri, Z., Подкорытов, И. С., Saxena, S. & Скрынников, Н. Р., 6 Dec 2019, (Accepted/In press) In : Scientific Reports.

Research output

Structural Fluctuations in Rhodopsin Activation Revealed by Neutron Scattering

Perera, S. M. D. C., Chawla, U., Shrestha, U., Bhowmik, D., Struts, A. V., Qian, S., Chu, X-Q. & Brown, M. F., 15 Feb 2019, In : Biophysical Journal. 116, 3, p. 53A-53A 1 p.

Research output

1 Citation (Scopus)

Study of liquid crystals showing two isotropic phases by 1 H NMR diffusometry and 1 H NMR relaxometry

Gradišek, A., Cifelli, M., Wojcik, M., Apih, T., Dvinskikh, S. V., Gorecka, E. & Domenici, V., Mar 2019, In : Crystals. 9, 3, 178.

Research output

Open Access
Liquid Crystals
Liquid crystals
liquid crystals
Nuclear magnetic resonance
nuclear magnetic resonance
2018
2 Citations (Scopus)

15N– 13C Dipole Couplings in Smectic Mesophase of a Thermotropic Ionic Liquid

Cifelli, M., Domenici, V., Chizhik, V. I. & Dvinskikh, S. V., Jun 2018, In : Applied Magnetic Resonance. 49, 6, p. 553–562 10 p.

Research output

dipoles
nuclear magnetic resonance
liquids
resonance probes
ionic crystals

A multinuclear NMR study of a thermotropic ionic liquid crystal.

Cifelli, M., Domenici, V. & Двинских, С. В., 16 Sep 2018.

Research output

C-13 NMR spectrum of crystalline [Rh(Acac) (CO)(2)]: A contribution to the discussion on [Rh(Acac) (CO)(2)] molecular structure in the solid state

Varshaysky, Y. S., Cherkasova, T. G., Galding, M. R., Korlyukov, A. A., Podkorytov, I. S., Gindin, V. A., Smirnov, S. N., Mazur, A. S. & Rubaylo, A., 1 Nov 2018, In : Journal of Organometallic Chemistry. 874, p. 70-73 4 p.

Research output

1 Citation (Scopus)

Chapter 13: Characterization of Liquid-crystalline Materials by Separated Local Field Methods

Dvinskikh, S. V., 1 Jan 2018, New Developments in NMR. Hodgkinson, P. (ed.). 15 ed. Royal Society of Chemistry, p. 391-423 33 p. (New Developments in NMR; vol. 2018-January, no. 15).

Research output

Liquid Crystals
Nuclear magnetic resonance
Nuclear magnetic resonance spectroscopy
Magnetic Resonance Spectroscopy

Covalent binding of modified Sos1-derived peptide and N-terminal SH3-domain of adapter protein Grb2

Luzik, D. A., Rogacheva, O. N., Izmailov, S. A., Indeykina, M. A., Tyuryaeva, I. I., Bushmanova, E. L., Podkorytov, I. S. & Skrynnikov, N. R., 2018, Актуальные проблемы трансляционной биомедицины - 2018: Сборник тезисов. СПБ.: Издательство Санкт-Петербургского университета, p. 73

Research output

Disulfide Bonds and how they Cause Protein Aggregation: Perspectives from NMR, Md Modeling and Cell Culture Experiments

Rabdano, S., Skrynnikov, N., Izmailov, S., Tyuryaeva, I., Luzik, D., Rogacheva, O., Lyublinskaya, O. & Podkorytov, I., 21 Nov 2018, In : Protein Science. 27, S1, p. 43

Research output

Dynamic modes revealed by MD simulations, experimental and computed EPR spectra in spin-labeled protein

Rabdano, S. O., Izmailov, S. A., Podkorytov, I. S., Cunningham, T., Jaroniec, C., Saxena, S. & Skrynnikov, N. R., 2018.

Research output

Dynamics of Membrane Proteins Studied by Solid State 2H NMR Relaxation

Xu, X., Struts, A. V., Giri, A. K., Molugu, T. R., Guruge, C., Faylough, S., Nascimento, C. L., Nesnas, N., Hruby, V. J. & Brown, M. F., 2018, In : Biophysical Journal. 114, p. 242a

Research output

ESR spectra simulation form MD data using Redfield theory and direct propagation method

Измайлов, С. А., Рабдано, С. О., Подкорытов, И. С. & Скрынников, Н. Р., 2018, p. 73-73. 1 p.

Research output

ESR spectroscopy as a probe of protein dynamics: an insight from long MD simulations

Рабдано, С. О., Измайлов, С. А., Подкорытов, И. С., Cunningham, T. F., Jaroniec, C. P., Saxena, S. & Skrynnikov, N. S., 20 Jul 2018, Актуальные проблемы трансляционной биомедицины - 2018: Сборник тезисов. СПб.: Издательство Санкт-Петербургского университета, p. 74

Research output

ESR spectroscopy as a probe of protein dynamics: an insight from long MD simulations

Izmailov, S., Rabdano, S., Podkorytov, I., Cunningham, T., Jaroniec, C., Saxena, S. & Skrynnikov, N., Jul 2018, In : FEBS Open Bio. 8, p. 409-409 1 p.

Research output

Open Access

ESR spectroscopy as a probe of protein dynamics: the effect of different motional modes on the simulated lineshapes

Рабдано, С. О., Izmailov, S., Podkorytov, I., Cunningham, T., Jaroniec, C., Saxena, S. & Skrynnikov, N., 7 Jul 2018.

Research output

Liquid Crystals
Nuclear magnetic resonance spectroscopy
liquid crystals
Isotopes
nuclear magnetic resonance

Insights to ESR spectra from molecular dynamics simulation

Измайлов, С. А., Скрынников, Н. Р., Подкорытов, И. С., Рабдано, С. О., Saxena, S., Jaroniec, C. & Cunningham, T., 2018, p. 265-265. 1 p.

Research output

Interview with David A. Case: On force fields, biomolecular modeling, and NMR

Скрынников, Н. Р. & Case, D. A., 1 Feb 2018, In : Concepts in Magnetic Resonance Part A: Bridging Education and Research. 45A, 5, p. 1-14 14 p., e21403.

Research output

Many faces of disulfide bond

Рабдано, С. О., Измайлов, С. А., Лузик, Д. А., Рогачева, О. Н., Тюряева, И. И., Люблинская, О., Подкорытов, И. С. & Скрынников, Н. Р., 2018, p. 48.

Research output

1 Citation (Scopus)

Optimal control RF pulses for excitation and suppression of NMR signals in a conductive medium

Kharkov, B., Strouk, L., Skinner, T. E. & Jerschow, A., 21 Jul 2018, In : Journal of Chemical Physics. 149, 3, 034201.

Research output

Conductive materials
optimal control
Liquid metals
Control theory
Lithium
2 Citations (Scopus)

Small-Angle Neutron Scattering Reveals Energy Landscape for Rhodopsin Photoactivation

Perera, S. M. D. C., Chawla, U., Shrestha, U. R., Bhowmik, D., Struts, A. V., Qian, S., Chu, X-Q. & Brown, M. F., 2018, In : Journal of Physical Chemistry Letters. 9, 24, p. 7064-7071 8 p.

Research output

Solid-state deuterium NMR spectroscopy of rhodopsin

Perera, S. M. D. C., Xu, X., Molugu, T. R., Struts, A. V. & Brown, M. F., 2018, Modern Magnetic Resonance. G.A.Webb (ed.). Springer, p. 1251-1270 20 p.

Research outputpeer-review

rhodopsin
Rhodopsin
deuterium
Deuterium
Nuclear magnetic resonance spectroscopy