Research Output 1974 2020

attraction
Pendulums
vibration
random vibration
pendulums
1 Downloads (Pure)
Open Access
File
Project Scheduling
Bicriteria
Optimization Techniques
Idempotent
Bicriteria Optimization

BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs

Meleshko, D., Mohimani, H., Tracanna, V., Hajirasouliha, I., Medema, M. H., Korobeynikov, A. & Pevzner, P. A., 1 Aug 2019, In : Genome Research. 29, 8, p. 1352-1362

Research output

Open Access
Multigene Family
Metagenomics
Genome
Microbial Genome
Firearms
Open Access
File
Matrix Inequality
Subset
Vector addition
Semifield
Unknown

EOP Time Series Prediction Using Singular Spectrum Analysis

Охотников, Г. & Голяндина, Н. Э., 2019, Proceedings of MACLEAN: MAChine Learning for EArth ObservatioN Workshop co-located with the European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML/PKDD 2019). RWTH Aahen University, Vol. 2466. 10 p. 1. (CEUR Workshop Proceedings ).

Research output

Open Access

MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities

Cao, L., Gurevich, A., Alexander, K. L., Naman, C. B., Leão, T., Glukhov, E., TalLuzzatto-Knaan, T., Vargas, F., Quinn, R., Bouslimani, A., Nothias, L. F., Singh, N. K., Sanders, J. G., Benitez, R. A. S., Thompson, L. R., Hamid, M-N., Morton, J. T., Mikheenko, A., Shlemov, A., Korobeynikov, A. & 8 others, Friedberg, I., Knight, R., Venkateswaran, K., Gerwick, W. H., Gerwick, L., Dorrestein, P. C., Pevzner, P. A. & Mohimani, H., 16 Oct 2019, In : Cell Systems.

Research output

Biological Products
Microbiota
Peptides
Social Networking
Metagenomics

Monte Carlo Method for Solving ODE Systems

Ермаков, С. М. & Товстик, Т. М., 2019, Vestnik St. Petersburg University: Mathematics, 52, 3, p. 272-280 9 p.

Research output

Open Access
Monte Carlo method
System of Integral Equations
Transition Density
Cubic equation
Linear Ordinary Differential Equations

Noise model estimation with application to gene expression

Zhornikova, P., Golyandina, N. & Spirov, A., 1 Apr 2019, In : Journal of Bioinformatics and Computational Biology. 17, 2, 20 p., 1950009.

Research output

Gene expression
Gene Expression
Noise
Singular Spectrum Analysis
Multiplicative Model

On Machine Learning In Regression Analysis

Leora, S. N. & Ermakov, S. M., Sep 2019, 10th International Workshop on Simulation and Statistics: Workshop booklet. Salzburg: Universitat Salzburg, p. 52

Research output

3 Downloads (Pure)
Open Access
File
Markov processes
Integral equations
Stochastic Equations
Differential equations
Monte Carlo methods
Positive Matrices
Optimization Methods
Approximation Problem
Approximation
Semifield
Polynomial Regression
Intercept
Chebyshev System
Regression Function
Coefficient

PathRacer: Racing Profile HMM Paths on Assembly Graph

Shlemov, A. & Korobeynikov, A., 25 May 2019, 6th International Conference on Algorithms for Computational Biology. Vega-Rodríguez, M. A., Holmes, I. & Martín-Vide, C. (eds.). Springer, p. 80-94 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11488 LNBI).

Research output

Hidden Markov models
Markov Model
Path
Genes
Graph in graph theory

Random Search Method with a “Memory” for Global Extremum of a Function

Vladimirova, L. V. & Ermakov, S. M., Sep 2019, 10th International Workshop on Simulation and Statistics: Workshop booklet. Salzburg: Universitat Salzburg, p. 89

Research output

Random Search
Extremum
Search Methods
Dynamic Optimization
Stochastic Optimization
Robust Design
Regression Model
Maximin
Circular function
Optimization Problem

Selection of a covariance kernel for a Gaussian random field aimed for modeling global optimization problems

Žilinskas, A., Zhigljavsky, A., Nekrutkin, V. & Kornikov, V., 12 Feb 2019, 14TH INTERNATIONAL GLOBAL OPTIMIZATION WORKSHOP (LEGO). Deutz, A. H., Hille, S. C., Sergeyev, Y. D. & Emmerich, M. T. M. (eds.). American Institute of Physics, Vol. 2070. 4 p. 20043. (AIP Conference Proceedings; vol. 2070).

Research output

optimization
estimators
boxes

Sequence Analysis

Пржибельский, А. Д., Коробейников, А. И. & Лапидус, А. Л., 2019, Encyclopedia of Bioinformatics and Computational Biology: Reference Module in Life Sciences. Elsevier, Vol. 3. p. 292-322

Research output

1 Downloads (Pure)
Optimal Scheduling
Optimization Problem
Objective function
Idempotent
Semiring
Basin of Attraction
Vertical
Vibration
Asymptotic Methods
Perturbation

The Monte Carlo Method for a Solution of ODE System

Tovstik, T. M. & Ermakov, S. M., Sep 2019, 10th International Workshop on Simulation and Statistics: Workshop booklet. Salzburg: Universitat Salzburg, p. 90

Research output

Monte Carlo method
Solution Existence
Polynomial
Systematic Error
Random Error

Two-Dimensional Model of a Plate, Made of Material with the General Anisotropy

Belyaev, A. K., Morozov, N. F., Tovstik, P. E., Tovstik, T. P. & Zelinskaya, A. V., 1 Jan 2019, Advanced Structured Materials. Springer, p. 91-108 18 p. (Advanced Structured Materials; vol. 110).

Research output

Anisotropy
Linear systems
Elasticity

Using tropical optimization in rank-one approximation of non-negative matrices

Кривулин, Н. К. & Романова, Е. Ю., 2019, International conference “Polynomial Computer Algebra’ 2019”, St. Petersburg, April 15-20, Euler International Mathematical Institute. Vassiliev, N. N. (ed.). Санкт-Петербург: Издательство «ВВМ», p. 85-88

Research output

Open Access
File

ФИЗИЧЕСКАЯ КУЛЬТУРА И ЗДОРОВЬЕ МОЛОДЕЖИ

Алексеева, Н. П. & Радченко, А. С., 2019, СОВРЕМЕННЫЕ СРЕДСТВА ЕЖЕДНЕВНОГО КОНТРОЛЯ ФИЗИЧЕСКОЙ АКТИВНОСТИ ЧЕЛОВЕКА. Санкт-Петербург: Санкт-Петербургский Гуманитарный университет профсоюзов, p. 16-17 2 p.

Research output

2018

Algebraic solution of weighted minimax single-facility constrained location problems

Кривулин, Н. К., Oct 2018, Relational and Algebraic Methods in Computer Science: 17th International Conference, RAMiCS 2018, Groningen, The Netherlands, October 29 – November 1, 2018, Proceedings. Desharnais, J., Guttmann, W. & Joosten, S. (eds.). Cham: Springer, p. 317-332 (Lecture Notes in Computer Science; vol. 11194).

Research output

Location Problem
Minimax
Chebyshev
Idempotent
Optimization Problem

Applied theory of shallow multilayered or functionally graded shells

Tovstik, P. E. & Tovstik, T. P., 1 Jan 2018, Shell Structures: Theory and Applications Volume 4 - Proceedings of the 11th International Conference on Shell Structures: Theory and Applications, SSTA 2017. Pietraszkiewicz, W. & Witkowski, W. (eds.). Taylor & Francis, p. 181-184 4 p. (Shell Structures: Theory and Applications Volume 4 - Proceedings of the 11th International Conference on Shell Structures: Theory and Applications, SSTA 2017).

Research output

Buckling
Stress concentration
Elasticity
Elastic moduli
2 Citations (Scopus)

Autoprobiotics as an Approach for Restoration of Personalised Microbiota

Суворов, А. Н., Карасева, А. Б., Котылева, М. П., Кондратенко, Ю. Д., Лавренова, Н., Коробейников, А. И., Козырев, П. А., Крамская, Т. А., Леонтьева, Г., Кудрявцев, И. В., Guo, D., Лапидус, А. Л. & Ермоленко, Е. И., 12 Sep 2018, In : Frontiers in Microbiology. 9, 1869.

Research output

Open Access
1 Citation (Scopus)
Semifield
Optimization Problem
Solution Set
Irreducible Matrix
Subset
14 Citations (Scopus)

Dereplication of microbial metabolites through database search of mass spectra

Mohimani, H., Гуревич, А. А., Шлемов, А. Ю., Михеенко, А. А., Коробейников, А. И., Cao, L., Щербин, Е., Nothias, L-F., Dorrestein, P. C. & Певзнер, П. А., 1 Dec 2018, In : Nature Communications. 9, 1, 12 p., 4035.

Research output

Open Access
metabolites
Metabolites
Biological Products
mass spectra
Databases