Research Output

MGnify: the microbiome analysis resource in 2020

Mitchell, A. L., Almeida, A., Beracochea, M., Boland, M., Burgin, J., Cochrane, G., Crusoe, M. R., Kale, V., Potter, S. C., Richardson, L. J., Sakharova, E., Scheremetjew, M., Korobeynikov, A., Shlemov, A., Kunyavskaya, O., Lapidus, A. & Finn, R. D., 8 Jan 2020, In : Nucleic Acids Research. 48, D1, p. D570-D578 9 p.

Research output

Open Access
1 Citation (Scopus)
1 Citation (Scopus)
1 Citation (Scopus)
2019

Bi-criteria time-constrained project scheduling with tropical optimization techniques

Krivulin, N., 2019, EURO 2019 - Dublin. p. 245

Research outputpeer-review

Open Access
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2 Downloads (Pure)

BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs

Meleshko, D., Mohimani, H., Tracanna, V., Hajirasouliha, I., Medema, M. H., Korobeynikov, A. & Pevzner, P. A., 1 Aug 2019, In : Genome Research. 29, 8, p. 1352-1362

Research output

Open Access
2 Citations (Scopus)

Complete solution of tropical vector inequalities using matrix sparsification

Krivulin, N., 2019, MAT TRIAD 2019: International Conference on Matrix Analysis and its Applications: Book of Abstracts. Bok, J., Hartman, D., Hladík, M. & Rozložník, M. (eds.). Prague: Charles University in Prague, p. 38-38

Research outputpeer-review

Open Access
File
Open Access

EOP time series prediction using singular spectrum analysis

Okhotnikov, G. & Golyandina, N., 2019, Proceedings of MACLEAN: MAChine Learning for EArth ObservatioN Workshop. Corpetti, T., Ienco, D., Interdonato, R. & et al. (eds.). RWTH Aahen University, 10 p. (CEUR Workshop Proceedings; vol. 2466).

Research output

Excess And Saturated D-optimal Designs For The Rational Model

Shpilev, P. V., Grigoriev, Y. D. & Melas, V. B., 2019, 10th International Workshop on Simulation and Statistics: Workshop booklet. p. 42

Research output

MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities

Cao, L., Gurevich, A., Alexander, K. L., Naman, C. B., Leão, T., Glukhov, E., Luzzatto-Knaan, T., Vargas, F., Quinn, R., Bouslimani, A., Nothias, L. F., Singh, N. K., Sanders, J. G., Benitez, R. A. S., Thompson, L. R., Hamid, M. N., Morton, J. T., Mikheenko, A., Shlemov, A., Korobeynikov, A. & 8 others, Friedberg, I., Knight, R., Venkateswaran, K., Gerwick, W. H., Gerwick, L., Dorrestein, P. C., Pevzner, P. A. & Mohimani, H., 18 Dec 2019, In : Cell Systems. 9, 6, p. 600-608.e4 13 p.

Research output

2 Citations (Scopus)

Monte Carlo Method for Solving ODE Systems

Ermakov, S. M. & Tovstik, T. M., 2019, Vestnik St. Petersburg University: Mathematics, 52, 3, p. 272-280.

Research output

Open Access

Noise model estimation with application to gene expression

Zhornikova, P., Golyandina, N. & Spirov, A., 1 Apr 2019, In : Journal of Bioinformatics and Computational Biology. 17, 2, 20 p., 1950009.

Research output

On an Attraction Basin of the Generalized Kapitsa's problem

Товстик, П. Е., Беляев, А. К., Морозов, Н. Ф., Товстик, Т. М., Кулижников, Д. Б. & Товстик, Т. П., Jun 2019, COMPDYN 2019 7th ECCOMAS: Thematic Conf. on Comp. Methods in Structural Dynamics and Earthquake Eng.. Crete. Greece. 2019,

Research outputpeer-review

On Machine Learning In Regression Analysis

Leora, S. N. & Ermakov, S. M., Sep 2019, 10th International Workshop on Simulation and Statistics: Workshop booklet. Salzburg: Universitat Salzburg, p. 52

Research outputpeer-review

Open Access
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11 Downloads (Pure)

PathRacer: Racing Profile HMM Paths on Assembly Graph

Shlemov, A. & Korobeynikov, A., 25 May 2019, 6th International Conference on Algorithms for Computational Biology. Vega-Rodríguez, M. A., Holmes, I. & Martín-Vide, C. (eds.). Springer Nature, p. 80-94 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11488 LNBI).

Research output

1 Citation (Scopus)

PathRacer: racing profile HMM paths on assembly graph

Shlemov, A. & Korobeynikov, A., 8 Nov 2019, In : BMC Bioinformatics. 20, Suppl 17, 1 p., О10.

Research output

Random Search Method with a “Memory” for Global Extremum of a Function

Vladimirova, L. V. & Ermakov, S. M., Sep 2019, 10th International Workshop on Simulation and Statistics: Workshop booklet. Salzburg: Universitat Salzburg, p. 89

Research outputpeer-review

Selection of a covariance kernel for a Gaussian random field aimed for modeling global optimization problems

Žilinskas, A., Zhigljavsky, A., Nekrutkin, V. & Kornikov, V., 12 Feb 2019, 14TH INTERNATIONAL GLOBAL OPTIMIZATION WORKSHOP (LEGO). Deutz, A. H., Hille, S. C., Sergeyev, Y. D. & Emmerich, M. T. M. (eds.). American Institute of Physics, Vol. 2070. 4 p. 20043. (AIP Conference Proceedings; vol. 2070).

Research output

Sequence Analysis

Пржибельский, А. Д., Коробейников, А. И. & Лапидус, А. Л., 2019, Encyclopedia of Bioinformatics and Computational Biology: Reference Module in Life Sciences. Elsevier, Vol. 3. p. 292-322

Research output

1 Citation (Scopus)
1 Downloads (Pure)

The Monte Carlo Method for a Solution of ODE System

Tovstik, T. M. & Ermakov, S. M., Sep 2019, 10th International Workshop on Simulation and Statistics: Workshop booklet. Salzburg: Universitat Salzburg, p. 90

Research outputpeer-review

2 Citations (Scopus)

Using tropical optimization in rank-one approximation of non-negative matrices

Кривулин, Н. К. & Романова, Е. Ю., 2019, International conference “Polynomial Computer Algebra’ 2019”, St. Petersburg, April 15-20, Euler International Mathematical Institute. Vassiliev, N. N. (ed.). Санкт-Петербург: Издательство «ВВМ», p. 85-88

Research outputpeer-review

Open Access
File
File
14 Downloads (Pure)

Использование тропической оптимизации для одноранговой аппроксимации положительных матриц с пропусками

Кривулин, Н. К. & Романова, Е. Ю., 2019, (Accepted/In press) Материалы 8-й Всероссийской научной конференции по проблемам информатики СПИСОК-2019. 23–26 апреля 2019 г. Санкт-Петербург.. Санкт-Петербург: Издательство «ВВМ», p. 305-311 (СПИСОК. Всероссийская научная конференция по проблемам информатики).

Research outputpeer-review