Research Output 1966 2020

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комментарий, выступление
2019

CD73 rather than CD39 is mainly involved in controlling purinergic signaling in calcified aortic valve disease

Kudryavtsev, I. V., Serebriakova, M., Zhiduleva, E., Murtazalieva, P., Titov, V., Malashicheva, A., Shishkova, A., Semenova, D., Irtyuga, O., Isakov, D., Moiseeva, O. & Golovkin, A., 1 Jan 2019, In : Frontiers in Genetics. 10, JUN, 604.

Research output

Open Access
2018
2 Citations (Scopus)

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea (Nature Biotechnology (2017) 35 (725-731) DOI: 10.1038/nbt.3893)

Bowers, R. M., Kyrpides, N. C., Stepanauskas, R., Harmon-Smith, M., Doud, D., Reddy, T. B. K., Schulz, F., Jarett, J., Rivers, A. R., Eloe-Fadrosh, E. A., Tringe, S. G., Ivanova, N. N., Copeland, A., Clum, A., Becraft, E. D., Malmstrom, R. R., Birren, B., Podar, M., Bork, P., Weinstock, G. M. & 30 others, Garrity, G. M., Dodsworth, J. A., Yooseph, S., Sutton, G., Glöckner, F. O., Gilbert, J. A., Nelson, W. C., Hallam, S. J., Jungbluth, S. P., Ettema, T. J. G., Tighe, S., Konstantinidis, K. T., Liu, W. T., Baker, B. J., Rattei, T., Eisen, J. A., Hedlund, B., Mcmahon, K. D., Fierer, N., Knight, R., Finn, R., Cochrane, G., Karsch-Mizrachi, I., Tyson, G. W., Rinke, C., Lapidus, A., Meyer, F., Yilmaz, P., Parks, D. H. & Eren, A. M., 6 Jul 2018, In : Nature Biotechnology. 36, 7, 1 p.

Research output

Metagenome
HTML
Archaea
Biotechnology
Bacteria
3 Citations (Scopus)

First Jurassic frog from Siberia, Russia

Skutschas, P. P., Martin, T. & Krasnolutskii, S. A., 2016, In : Journal of Vertebrate Paleontology.

Research output

paleontology
frog
vertebrate
Jurassic
2015
1 Citation (Scopus)

Correction: The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry [PLoS Genet, 11(12), (2015)]

de Wit, P. J. G. M., van der Burgt, A., Ökmen, B., Stergiopoulos, I., Abd-Elsalam, K. A., Aerts, A. L., Bahkali, A. H., Beenen, H. G., Chettri, P., Cox, M. P., Datema, E., de Vries, R. P., Dhillon, B., Ganley, A. R., Griffiths, S. A., Guo, Y., Hamelin, R. C., Henrissat, B., Shahjahan Kabir, M., Karimi Jashni, M. & 19 others, Kema, G., Klaubauf, S., Lapidus, A., Levasseur, A., Lindquist, E., Mehrabi, R., Ohm, R. A., Owen, T. J., Salamov, A., Schwelm, A., Schijlen, E., Sun, H., van den Burg, H. A., van Ham, R. C. H. J., Zhang, S., Goodwin, S. B., Grigoriev, I. V., Collemare, J. & Bradshaw, R. E., 22 Dec 2015, In : PLoS Genetics. 11, 12, e1005775.

Research output

1 Citation (Scopus)

Erratum: Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche (Proceedings of the National Academy of Sciences of the United States of America (2012) 109 (17501-17506) DOI: 10.1073/pnas.1206847109)

Morin, E., Kohler, A., Baker, A. R., Foulongne-Oriol, M., Lombard, V., Nagy, L. G., Ohm, R. A., Patyshakuliyeva, A., Brun, A., Aerts, A. L., Bailey, A. M., Billette, C., Coutinho, P. M., Deakin, G., Doddapaneni, H., Floudas, D., Grimwood, J., Hildén, K., Kües, U., Labutti, K. M. & 23 others, Lapidus, A., Lindquist, E. A., Lucas, S. M., Murat, C., Riley, R. W., Salamov, A. A., Schmutz, J., Subramanian, V., Wösten, H. A. B., Xu, J., Eastwood, D. C., Foster, G. D., Sonnenberg, A. S. M., Cullen, D., De Vries, R. P., Lundell, T., Hibbett, D. S., Henrissat, B., Burton, K. S., Kerrigan, R. W., Challen, M. P., Grigoriev, I. V. & Martin, F., 5 Mar 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 10, 1 p.

Research output

2012
8 Citations (Scopus)

Complete genome sequence of Desulfurococcus fermentans, a hyperthermophilic cellulolytic crenarchaeon isolated from a freshwater hot spring in Kamchatka, Russia

Susanti, D., Johnson, E. F., Rodriguez, J. R., Anderson, I., Perevalova, A. A., Kyrpides, N., Lucas, S., Han, J., Lapidus, A., Cheng, J. F., Goodwin, L., Pitluck, S., Mavrommatis, K., Peters, L., Land, M. L., Hauser, L., Gopalan, V., Chan, P. P., Lowe, T. M., Atomi, H. & 3 others, Bonch-Osmolovskaya, E. A., Woyke, T. & Mukhopadhyaya, B., 1 Oct 2012, In : Journal of Bacteriology. 194, 20, p. 5703-5704 2 p.

Research output

Desulfurococcaceae
Hot Springs
Russia
Fresh Water
Hydrogen
16 Citations (Scopus)

Complete genome sequence of the thermophilic, piezophilic, heterotrophic bacterium Marinitoga piezophila KA3

Lucas, S., Han, J., Lapidus, A., Cheng, J. F., Goodwin, L. A., Pitluck, S., Peters, L., Mikhailova, N., Teshima, H., Detter, J. C., Han, C., Tapia, R., Land, M., Hauser, L., Kyrpides, N. C., Ivanova, N., Pagani, I., Vannier, P., Oger, P., Bartlett, D. H. & 3 others, Noll, K. M., Woyke, T. & Jebbar, M., 1 Nov 2012, In : Journal of Bacteriology. 194, 21, p. 5974-5975 2 p.

Research output

Hydrothermal Vents
Genome
Bacteria
Sulfur-Reducing Bacteria
Chromosomes, Human, Pair 13
33 Citations (Scopus)

Complete genome sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T

Pester, M., Brambilla, E., Alazard, D., Rattei, T., Weinmaier, T., Han, J., Lucas, S., Lapidus, A., Cheng, J. F., Goodwin, L., Pitluck, S., Peters, L., Ovchinnikova, G., Teshima, H., Detter, J. C., Han, C. S., Tapia, R., Land, M. L., Hauser, L., Kyrpides, N. C. & 18 others, Ivanova, N. N., Pagani, I., Huntmann, M., Wei, C. L., Davenport, K. W., Daligault, H., Chain, P. S. G., Chen, A., Mavromatis, K., Markowitz, V., Szeto, E., Pati, A., Wagner, M., Woyke, T., Ollivier, B., Klenk, H. P., Spring, S. & Loy, A., 1 Nov 2012, In : Journal of Bacteriology. 194, 22, p. 6300-6301 2 p.

Research output

Sulfates
Genome
Molecular Evolution
Toluene
Bacteria
9 Citations (Scopus)

Erratum: Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis (Proceedings of the National Academy of Sciences (2012) 109 (5458-5463) DOI: 10.1073/pnas. 1119912109)

Fernandez-Fueyo, E., Ruiz-Dueñas, F. J., Ferreira, P., Floudas, D., Hibbett, D. S., Canessa, P., Larrondo, L. F., James, T. Y., Seelenfreund, D., Lobos, S., Polanco, R., Tello, M., Honda, Y., Watanabe, T., Watanabe, T., Ryu, J. S., Kubicek, C. P., Schmoll, M., Gaskell, J., Hammel, K. E. & 46 others, St John, F. J., Vanden Wymelenberg, A., Sabat, G., BonDurant, S. S., Syed, K., Yadav, J. S., Doddapaneni, H., Subramanian, V., Lavín, J. L., Oguiza, J. A., Perez, G., Pisabarro, A. G., Ramirez, L., Santoyo, F., Master, E., Coutinho, P. M., Henrissat, B., Lombard, V., Magnuson, J. K., Kües, U., Hori, C., Igarashi, K., Samejima, M., Held, B. W., Barry, K. W., LaButti, K. M., Lapidus, A., Lindquist, E. A., Lucas, S. M., Riley, R., Salamov, A. A., Hoffmeister, D., Schwenk, D., Hadar, Y., Yarden, O., De Vries, R. P., Wiebenga, A., Stenlid, J., Eastwood, D., Grigoriev, I. V., Berka, R. M., Blanchette, R. A., Kersten, P., Martinez, A. T., Vicuna, R. & Cullen, D., 22 May 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 21, 1 p.

Research output

2011
43 Citations (Scopus)

Complete genome of the cellulolytic ruminal bacterium Ruminococcus albus 7

Suen, G., Stevenson, D. M., Bruce, D. C., Chertkov, O., Copeland, A., Cheng, J. F., Detter, C., Detter, J. C., Goodwin, L. A., Han, C. S., Hauser, L. J., Ivanova, N. N., Kyrpides, N. C., Land, M. L., Lapidus, A., Lucas, S., Ovchinnikova, G., Pitluck, S., Tapia, R., Woyke, T. & 3 others, Boyum, J., Mead, D. & Weimer, P. J., 1 Oct 2011, In : Journal of Bacteriology. 193, 19, p. 5574-5575 2 p.

Research output

Open Access
Ruminococcus
Cellulosomes
Genome
Bacteria
Biofuels
36 Citations (Scopus)

Complete genome sequence and updated annotation of Desulfovibrio alaskensis G20

Hauser, L. J., Land, M. L., Brown, S. D., Larimer, F., Keller, K. L., Rapp-Giles, B. J., Price, M. N., Lin, M., Bruce, D. C., Detter, J. C., Tapia, R., Han, C. S., Goodwin, L. A., Cheng, J. F., Pitluck, S., Copeland, A., Lucas, S., Nolan, M., Lapidus, A. L., Palumbo, A. V. & 1 others, Wall, J. D., 1 Aug 2011, In : Journal of Bacteriology. 193, 16, p. 4268-4269 2 p.

Research output

Desulfovibrio
Poisons
Desulfovibrio desulfuricans
Metals
Genome
43 Citations (Scopus)

Complete genome sequence of the aerobic marine methanotroph Methylomonas methanica MC09

Boden, R., Cunliffe, M., Scanlan, J., Moussard, H., Kits, K. D., Klotz, M. G., Jetten, M. S. M., Vuilleumier, S., Han, J., Peters, L., Teshima, H., Tapia, R., Kyrpides, N., Pagani, I., Cheng, J. F., Goodwin, L., Han, C., Hauser, L., Land, M. L., Lapidus, A. & 5 others, Lucas, S., Pitluck, S., Woyke, T., Stein, L. & Murrell, J. C., 1 Dec 2011, In : Journal of Bacteriology. 193, 24, p. 7001-7002 2 p.

Research output

Open Access
Methylomonas
Gammaproteobacteria
Seawater
Genome
54 Citations (Scopus)

Complete genome sequence of the cellulolytic thermophile Clostridium thermocellum DSM1313

Feinberg, L., Foden, J., Barrett, T., Davenport, K. W., Bruce, D., Detter, C., Tapia, R., Han, C., Lapidus, A., Lucas, S., Cheng, J. F., Pitluck, S., Woyke, T., Ivanova, N., Mikhailova, N., Land, M., Hauser, L., Argyros, D. A., Goodwin, L., Hogsett, D. & 1 others, Caiazza, N., 1 Jun 2011, In : Journal of Bacteriology. 193, 11, p. 2906-2907 2 p.

Research output

Clostridium thermocellum
Anaerobic Bacteria
Cellulose
Hydrolysis
Carbohydrates
14 Citations (Scopus)

Complete genome sequence of the cellulose-degrading bacterium Cellulosilyticum lentocellum

Miller, D. A., Suen, G., Bruce, D., Copeland, A., Cheng, J. F., Detter, C., Goodwin, L. A., Han, C. S., Hauser, L. J., Land, M. L., Lapidus, A., Lucas, S., Meincke, L., Pitluck, S., Tapia, R., Teshima, H., Woyke, T., Fox, B. G., Angert, E. R. & Currie, C. R., 1 May 2011, In : Journal of Bacteriology. 193, 9, p. 2357-2358 2 p.

Research output

Clostridium
Genomics
Rivers
Cellulose
Genome
27 Citations (Scopus)

Genome sequence of Chthoniobacter flavus Ellin428, an aerobic heterotrophic soil bacterium

Kant, R., van Passe, M. W. J., Palva, A., Lucas, S., Lapidus, A., del Rio, T. G., Dalin, E., Tice, H., Bruce, D., Goodwin, L., Pitluck, S., Larimer, F. W., Land, M. L., Hauser, L., Sangwan, P., de Vos, W. M., Janssen, P. H. & Smidt, H., 1 Jun 2011, In : Journal of Bacteriology. 193, 11, p. 2902-2903 2 p.

Research output

Verrucomicrobia
Plant Structures
Pyruvic Acid
Biomass
Soil
2007

Lentivirus as a tool for lineage-specific gene manipulations (Genesis 45, 7, (456-459))

Malashicheva, A., Kanzler, B., Tolkunova, E., Trono, D. & Tomilin, A., 1 Dec 2007, In : Genesis. 45, 12, 1 p.

Research output