Research Output

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Insights Image for “Dysregulation of Notch signaling in cardiac mesenchymal cells of patients with Tetralogy of Fallot”

Kozyrev, I., Dokshin, P., Kostina, A., Kiselev, A., Ignatieva, E., Golovkin, A., Pervunina, T., Grekhov, E., Kostareva, A. & Malashicheva, A., 1 Jan 2020, (Accepted/In press) In : Pediatric Research.

Research output

Open Access
2018

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea (Nature Biotechnology (2017) 35 (725-731) DOI: 10.1038/nbt.3893)

Bowers, R. M., Kyrpides, N. C., Stepanauskas, R., Harmon-Smith, M., Doud, D., Reddy, T. B. K., Schulz, F., Jarett, J., Rivers, A. R., Eloe-Fadrosh, E. A., Tringe, S. G., Ivanova, N. N., Copeland, A., Clum, A., Becraft, E. D., Malmstrom, R. R., Birren, B., Podar, M., Bork, P., Weinstock, G. M. & 30 others, Garrity, G. M., Dodsworth, J. A., Yooseph, S., Sutton, G., Glöckner, F. O., Gilbert, J. A., Nelson, W. C., Hallam, S. J., Jungbluth, S. P., Ettema, T. J. G., Tighe, S., Konstantinidis, K. T., Liu, W. T., Baker, B. J., Rattei, T., Eisen, J. A., Hedlund, B., Mcmahon, K. D., Fierer, N., Knight, R., Finn, R., Cochrane, G., Karsch-Mizrachi, I., Tyson, G. W., Rinke, C., Lapidus, A., Meyer, F., Yilmaz, P., Parks, D. H. & Eren, A. M., 6 Jul 2018, In : Nature Biotechnology. 36, 7, p. 660-660 1 p.

Research output

3 Citations (Scopus)

First Jurassic frog from Siberia, Russia

Skutschas, P. P., Martin, T. & Krasnolutskii, S. A., 2016, In : Journal of Vertebrate Paleontology.

Research output

3 Citations (Scopus)
2015

Correction: The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry [PLoS Genet, 11(12), (2015)]

de Wit, P. J. G. M., van der Burgt, A., Ökmen, B., Stergiopoulos, I., Abd-Elsalam, K. A., Aerts, A. L., Bahkali, A. H., Beenen, H. G., Chettri, P., Cox, M. P., Datema, E., de Vries, R. P., Dhillon, B., Ganley, A. R., Griffiths, S. A., Guo, Y., Hamelin, R. C., Henrissat, B., Shahjahan Kabir, M., Karimi Jashni, M. & 19 others, Kema, G., Klaubauf, S., Lapidus, A., Levasseur, A., Lindquist, E., Mehrabi, R., Ohm, R. A., Owen, T. J., Salamov, A., Schwelm, A., Schijlen, E., Sun, H., van den Burg, H. A., van Ham, R. C. H. J., Zhang, S., Goodwin, S. B., Grigoriev, I. V., Collemare, J. & Bradshaw, R. E., 22 Dec 2015, In : PLoS Genetics. 11, 12, e1005775.

Research output

1 Citation (Scopus)

Erratum: Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche (Proceedings of the National Academy of Sciences of the United States of America (2012) 109 (17501-17506) DOI: 10.1073/pnas.1206847109)

Morin, E., Kohler, A., Baker, A. R., Foulongne-Oriol, M., Lombard, V., Nagy, L. G., Ohm, R. A., Patyshakuliyeva, A., Brun, A., Aerts, A. L., Bailey, A. M., Billette, C., Coutinho, P. M., Deakin, G., Doddapaneni, H., Floudas, D., Grimwood, J., Hildén, K., Kües, U., Labutti, K. M. & 23 others, Lapidus, A., Lindquist, E. A., Lucas, S. M., Murat, C., Riley, R. W., Salamov, A. A., Schmutz, J., Subramanian, V., Wösten, H. A. B., Xu, J., Eastwood, D. C., Foster, G. D., Sonnenberg, A. S. M., Cullen, D., De Vries, R. P., Lundell, T., Hibbett, D. S., Henrissat, B., Burton, K. S., Kerrigan, R. W., Challen, M. P., Grigoriev, I. V. & Martin, F., 5 Mar 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 10, 1 p.

Research output

1 Citation (Scopus)
2012

Complete genome sequence of Desulfurococcus fermentans, a hyperthermophilic cellulolytic crenarchaeon isolated from a freshwater hot spring in Kamchatka, Russia

Susanti, D., Johnson, E. F., Rodriguez, J. R., Anderson, I., Perevalova, A. A., Kyrpides, N., Lucas, S., Han, J., Lapidus, A., Cheng, J. F., Goodwin, L., Pitluck, S., Mavrommatis, K., Peters, L., Land, M. L., Hauser, L., Gopalan, V., Chan, P. P., Lowe, T. M., Atomi, H. & 3 others, Bonch-Osmolovskaya, E. A., Woyke, T. & Mukhopadhyaya, B., 1 Oct 2012, In : Journal of Bacteriology. 194, 20, p. 5703-5704 2 p.

Research output

9 Citations (Scopus)

Complete genome sequence of the thermophilic, piezophilic, heterotrophic bacterium Marinitoga piezophila KA3

Lucas, S., Han, J., Lapidus, A., Cheng, J. F., Goodwin, L. A., Pitluck, S., Peters, L., Mikhailova, N., Teshima, H., Detter, J. C., Han, C., Tapia, R., Land, M., Hauser, L., Kyrpides, N. C., Ivanova, N., Pagani, I., Vannier, P., Oger, P., Bartlett, D. H. & 3 others, Noll, K. M., Woyke, T. & Jebbar, M., 1 Nov 2012, In : Journal of Bacteriology. 194, 21, p. 5974-5975 2 p.

Research output

16 Citations (Scopus)

Complete genome sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T

Pester, M., Brambilla, E., Alazard, D., Rattei, T., Weinmaier, T., Han, J., Lucas, S., Lapidus, A., Cheng, J. F., Goodwin, L., Pitluck, S., Peters, L., Ovchinnikova, G., Teshima, H., Detter, J. C., Han, C. S., Tapia, R., Land, M. L., Hauser, L., Kyrpides, N. C. & 18 others, Ivanova, N. N., Pagani, I., Huntmann, M., Wei, C. L., Davenport, K. W., Daligault, H., Chain, P. S. G., Chen, A., Mavromatis, K., Markowitz, V., Szeto, E., Pati, A., Wagner, M., Woyke, T., Ollivier, B., Klenk, H. P., Spring, S. & Loy, A., 1 Nov 2012, In : Journal of Bacteriology. 194, 22, p. 6300-6301 2 p.

Research output

34 Citations (Scopus)

Erratum: Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis (Proceedings of the National Academy of Sciences (2012) 109 (5458-5463) DOI: 10.1073/pnas. 1119912109)

Fernandez-Fueyo, E., Ruiz-Dueñas, F. J., Ferreira, P., Floudas, D., Hibbett, D. S., Canessa, P., Larrondo, L. F., James, T. Y., Seelenfreund, D., Lobos, S., Polanco, R., Tello, M., Honda, Y., Watanabe, T., Watanabe, T., Ryu, J. S., Kubicek, C. P., Schmoll, M., Gaskell, J., Hammel, K. E. & 46 others, St John, F. J., Vanden Wymelenberg, A., Sabat, G., BonDurant, S. S., Syed, K., Yadav, J. S., Doddapaneni, H., Subramanian, V., Lavín, J. L., Oguiza, J. A., Perez, G., Pisabarro, A. G., Ramirez, L., Santoyo, F., Master, E., Coutinho, P. M., Henrissat, B., Lombard, V., Magnuson, J. K., Kües, U., Hori, C., Igarashi, K., Samejima, M., Held, B. W., Barry, K. W., LaButti, K. M., Lapidus, A., Lindquist, E. A., Lucas, S. M., Riley, R., Salamov, A. A., Hoffmeister, D., Schwenk, D., Hadar, Y., Yarden, O., De Vries, R. P., Wiebenga, A., Stenlid, J., Eastwood, D., Grigoriev, I. V., Berka, R. M., Blanchette, R. A., Kersten, P., Martinez, A. T., Vicuna, R. & Cullen, D., 22 May 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 21, 1 p.

Research output

9 Citations (Scopus)
2011

Complete genome of the cellulolytic ruminal bacterium Ruminococcus albus 7

Suen, G., Stevenson, D. M., Bruce, D. C., Chertkov, O., Copeland, A., Cheng, J. F., Detter, C., Detter, J. C., Goodwin, L. A., Han, C. S., Hauser, L. J., Ivanova, N. N., Kyrpides, N. C., Land, M. L., Lapidus, A., Lucas, S., Ovchinnikova, G., Pitluck, S., Tapia, R., Woyke, T. & 3 others, Boyum, J., Mead, D. & Weimer, P. J., 1 Oct 2011, In : Journal of Bacteriology. 193, 19, p. 5574-5575 2 p.

Research output

Open Access
44 Citations (Scopus)

Complete genome sequence and updated annotation of Desulfovibrio alaskensis G20

Hauser, L. J., Land, M. L., Brown, S. D., Larimer, F., Keller, K. L., Rapp-Giles, B. J., Price, M. N., Lin, M., Bruce, D. C., Detter, J. C., Tapia, R., Han, C. S., Goodwin, L. A., Cheng, J. F., Pitluck, S., Copeland, A., Lucas, S., Nolan, M., Lapidus, A. L., Palumbo, A. V. & 1 others, Wall, J. D., 1 Aug 2011, In : Journal of Bacteriology. 193, 16, p. 4268-4269 2 p.

Research output

37 Citations (Scopus)

Complete genome sequence of the aerobic marine methanotroph Methylomonas methanica MC09

Boden, R., Cunliffe, M., Scanlan, J., Moussard, H., Kits, K. D., Klotz, M. G., Jetten, M. S. M., Vuilleumier, S., Han, J., Peters, L., Teshima, H., Tapia, R., Kyrpides, N., Pagani, I., Cheng, J. F., Goodwin, L., Han, C., Hauser, L., Land, M. L., Lapidus, A. & 5 others, Lucas, S., Pitluck, S., Woyke, T., Stein, L. & Murrell, J. C., 1 Dec 2011, In : Journal of Bacteriology. 193, 24, p. 7001-7002 2 p.

Research output

Open Access
43 Citations (Scopus)

Complete genome sequence of the cellulolytic thermophile Clostridium thermocellum DSM1313

Feinberg, L., Foden, J., Barrett, T., Davenport, K. W., Bruce, D., Detter, C., Tapia, R., Han, C., Lapidus, A., Lucas, S., Cheng, J. F., Pitluck, S., Woyke, T., Ivanova, N., Mikhailova, N., Land, M., Hauser, L., Argyros, D. A., Goodwin, L., Hogsett, D. & 1 others, Caiazza, N., 1 Jun 2011, In : Journal of Bacteriology. 193, 11, p. 2906-2907 2 p.

Research output

55 Citations (Scopus)

Complete genome sequence of the cellulose-degrading bacterium Cellulosilyticum lentocellum

Miller, D. A., Suen, G., Bruce, D., Copeland, A., Cheng, J. F., Detter, C., Goodwin, L. A., Han, C. S., Hauser, L. J., Land, M. L., Lapidus, A., Lucas, S., Meincke, L., Pitluck, S., Tapia, R., Teshima, H., Woyke, T., Fox, B. G., Angert, E. R. & Currie, C. R., 1 May 2011, In : Journal of Bacteriology. 193, 9, p. 2357-2358 2 p.

Research output

15 Citations (Scopus)

Genome sequence of Chthoniobacter flavus Ellin428, an aerobic heterotrophic soil bacterium

Kant, R., van Passe, M. W. J., Palva, A., Lucas, S., Lapidus, A., del Rio, T. G., Dalin, E., Tice, H., Bruce, D., Goodwin, L., Pitluck, S., Larimer, F. W., Land, M. L., Hauser, L., Sangwan, P., de Vos, W. M., Janssen, P. H. & Smidt, H., 1 Jun 2011, In : Journal of Bacteriology. 193, 11, p. 2902-2903 2 p.

Research output

28 Citations (Scopus)
2007

Lentivirus as a tool for lineage-specific gene manipulations (Genesis 45, 7, (456-459))

Malashicheva, A., Kanzler, B., Tolkunova, E., Trono, D. & Tomilin, A., 1 Dec 2007, In : Genesis. 45, 12, 1 p.

Research output